HL_6ERI_055

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUGGGGCGU

Length

9 nucleotides

Bulged bases

6ERI|1|AA|G|2267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_055 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.1463

The information below is about HL_4WF9_049

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6ERI|1|AA|A|2265
6ERI|1|AA|U|2266
6ERI|1|AA|G|2267
6ERI|1|AA|G|2268
6ERI|1|AA|G|2269
6ERI|1|AA|G|2270
6ERI|1|AA|C|2271
6ERI|1|AA|G|2272
6ERI|1|AA|U|2273

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AM

50S ribosomal protein L16, chloroplastic

Chain AW

50S ribosomal protein L27, chloroplastic

Chain Az

Ribosome-recycling factor, chloroplastic