HL_6ERI_057

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGACGGAGAUU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_057 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1725

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6ERI|1|AA|G|2320
6ERI|1|AA|G|2321
6ERI|1|AA|A|2322
6ERI|1|AA|C|2323
6ERI|1|AA|G|2324
6ERI|1|AA|G|2325
6ERI|1|AA|A|2326
6ERI|1|AA|G|2327
6ERI|1|AA|A|2328
6ERI|1|AA|U|2329
6ERI|1|AA|U|2330

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L5, chloroplastic