HL_6ERI_058

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_058 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.1193

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6ERI|1|AA|U|2341
6ERI|1|AA|G|2342
6ERI|1|AA|C|2343
6ERI|1|AA|A|2344
6ERI|1|AA|A|2345
6ERI|1|AA|A|2346
6ERI|1|AA|G|2347
6ERI|1|AA|G|2348

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L5, chloroplastic

Chain AM

50S ribosomal protein L16, chloroplastic

Chain AW

50S ribosomal protein L27, chloroplastic