HL_6ERI_062

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGUUCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_062 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.2041

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6ERI|1|AA|A|2488
6ERI|1|AA|G|2489
6ERI|1|AA|U|2490
6ERI|1|AA|U|2491
6ERI|1|AA|C|2492
6ERI|1|AA|A|2493
6ERI|1|AA|C|2494
6ERI|1|AA|A|2495
6ERI|1|AA|U|2496

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AG

50S ribosomal protein L6, chloroplastic

Chain AM

50S ribosomal protein L16, chloroplastic

Chain Ae

50S ribosomal protein L36, chloroplastic