HL_6ERI_073

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUCGAUCCUGG

Length

11 nucleotides

Bulged bases

6ERI|1|BA|C|16

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_073 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.1092

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.2

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6ERI|1|BA|U|14
6ERI|1|BA|U|15
6ERI|1|BA|C|16
6ERI|1|BA|G|17
6ERI|1|BA|A|18
6ERI|1|BA|U|19
6ERI|1|BA|C|20
6ERI|1|BA|C|21
6ERI|1|BA|U|22
6ERI|1|BA|G|23
6ERI|1|BA|G|24

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BE

30S ribosomal protein S5, chloroplastic

Chain BL

30S ribosomal protein S12, chloroplastic