HL_6ERI_080

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_080 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1322

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6ERI|1|BA|G|292
6ERI|1|BA|A|293
6ERI|1|BA|C|294
6ERI|1|BA|U|295
6ERI|1|BA|G|296
6ERI|1|BA|A|297
6ERI|1|BA|G|298
6ERI|1|BA|A|299
6ERI|1|BA|C|300
6ERI|1|BA|A|301
6ERI|1|BA|C|302
6ERI|1|BA|G|303
6ERI|1|BA|G|304
6ERI|1|BA|C|305

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S16, chloroplastic

Chain BT

30S ribosomal protein S20, chloroplastic