HL_6ERI_083

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCACGG

Length

6 nucleotides

Bulged bases

6ERI|1|BA|A|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_083 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.1083

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

6ERI|1|BA|C|391
6ERI|1|BA|C|392
6ERI|1|BA|A|393
6ERI|1|BA|C|394
6ERI|1|BA|G|395
6ERI|1|BA|G|396

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BC

30S ribosomal protein S3, chloroplastic

Chain BD

30S ribosomal protein S4, chloroplastic