HL_6ERI_099

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAUAAG

Length

7 nucleotides

Bulged bases

6ERI|1|BA|U|1117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_099 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.2575

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6ERI|1|BA|U|1114
6ERI|1|BA|G|1115
6ERI|1|BA|A|1116
6ERI|1|BA|U|1117
6ERI|1|BA|A|1118
6ERI|1|BA|A|1119
6ERI|1|BA|G|1120

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S2, chloroplastic