HL_6ERI_101

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_101 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1334

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6ERI|1|BA|C|1263
6ERI|1|BA|U|1264
6ERI|1|BA|G|1265
6ERI|1|BA|C|1266
6ERI|1|BA|A|1267
6ERI|1|BA|A|1268
6ERI|1|BA|C|1269
6ERI|1|BA|U|1270
6ERI|1|BA|C|1271
6ERI|1|BA|G|1272

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BM

30S ribosomal protein S13, chloroplastic

Chain BN

30S ribosomal protein S14, chloroplastic

Chain BS

30S ribosomal protein S19, chloroplastic