HL_6ERI_105

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUAGAAGCAG

Length

11 nucleotides

Bulged bases

6ERI|1|AA|A|1098

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_105 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.4767

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6ERI|1|AA|C|1092
6ERI|1|AA|C|1093
6ERI|1|AA|U|1094
6ERI|1|AA|A|1095
6ERI|1|AA|G|1096
6ERI|1|AA|A|1097
6ERI|1|AA|A|1098
6ERI|1|AA|G|1099
6ERI|1|AA|C|1100
6ERI|1|AA|A|1101
6ERI|1|AA|G|1102

Current chains

Chain AA

23S ribosomal RNA

Nearby chains