HL_6FAI_003

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6FAI|1|2|U|158, 6FAI|1|2|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FAI_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1357

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6FAI|1|2|G|154
6FAI|1|2|U|155
6FAI|1|2|A|156
6FAI|1|2|A|157
6FAI|1|2|U|158
6FAI|1|2|U|159
6FAI|1|2|C|160

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-A

Chain Y

40S ribosomal protein S24-A