HL_6FAI_033
3D structure
- PDB id
- 6FAI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 6FAI|1|2|A|1559
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FAI_033 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.0963
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6FAI|1|2|A|1550
6FAI|1|2|U|1551
6FAI|1|2|U|1552
6FAI|1|2|G|1553
6FAI|1|2|U|1554
6FAI|1|2|A|1555
6FAI|1|2|A|1556
6FAI|1|2|U|1557
6FAI|1|2|U|1558
6FAI|1|2|A|1559
6FAI|1|2|U|1560
6FAI|1|2|U|1561
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain P
- 40S ribosomal protein S15
- Chain S
- 40S ribosomal protein S18-A
- Chain T
- 40S ribosomal protein S19-A
- Chain k
- Ribosome biogenesis protein TSR1
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