HL_6FAI_037

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUUAAUUGC

Length

10 nucleotides

Bulged bases

6FAI|1|2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FAI_037 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3991

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6FAI|1|2|G|1308
6FAI|1|2|C|1309
6FAI|1|2|U|1310
6FAI|1|2|U|1311
6FAI|1|2|A|1312
6FAI|1|2|A|1313
6FAI|1|2|U|1314
6FAI|1|2|U|1315
6FAI|1|2|G|1316
6FAI|1|2|C|1317

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain R

40S ribosomal protein S17-A