HL_6FEC_001
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- 6FEC|1|A|U|9
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FEC_001 not in the Motif Atlas
- Homologous match to HL_4V88_186
- Geometric discrepancy: 0.1659
- The information below is about HL_4V88_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.2
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6FEC|1|A|G|7
6FEC|1|A|U|8
6FEC|1|A|U|9
6FEC|1|A|G|10
6FEC|1|A|A|11
6FEC|1|A|U|12
6FEC|1|A|C|13
6FEC|1|A|C|14
6FEC|1|A|U|15
6FEC|1|A|G|16
6FEC|1|A|C|17
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- Messenger RNA (26-MER)
- Chain Q
- 40S ribosomal protein S23
- Chain c
- 40S ribosomal protein S2
Coloring options: