6FEC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6FEC_001 | No text annotation | ||
| HL_6FEC_002 | No text annotation | ||
| HL_6FEC_003 | GNRA related | ||
| HL_6FEC_004 | No text annotation | ||
| HL_6FEC_005 | No text annotation | ||
| HL_6FEC_006 | T-loop with 1 bulged base | ||
| HL_6FEC_007 | No text annotation | ||
| HL_6FEC_008 | No text annotation | ||
| HL_6FEC_009 | No text annotation | ||
| HL_6FEC_010 | No text annotation | ||
| HL_6FEC_011 | UNCG | ||
| HL_6FEC_012 | No text annotation | ||
| HL_6FEC_013 | GNRA | ||
| HL_6FEC_041 | No text annotation | ||
| HL_6FEC_014 | No text annotation | ||
| HL_6FEC_015 | GNRA variation | ||
| HL_6FEC_042 | No text annotation | ||
| HL_6FEC_016 | No text annotation | ||
| HL_6FEC_017 | No text annotation | ||
| HL_6FEC_018 | No text annotation | ||
| HL_6FEC_019 | No text annotation | ||
| HL_6FEC_020 | No text annotation | ||
| HL_6FEC_021 | No text annotation | ||
| HL_6FEC_045 | No text annotation | ||
| HL_6FEC_022 | GNRA | ||
| HL_6FEC_023 | No text annotation | ||
| HL_6FEC_046 | No text annotation | ||
| HL_6FEC_024 | No text annotation | ||
| HL_6FEC_043 | No text annotation | ||
| HL_6FEC_025 | GNRA | ||
| HL_6FEC_026 | GNRA | ||
| HL_6FEC_027 | No text annotation | ||
| HL_6FEC_028 | Anticodon loop related | ||
| HL_6FEC_029 | GNRA | ||
| HL_6FEC_030 | No text annotation | ||
| HL_6FEC_031 | GNRA | ||
| HL_6FEC_032 | GNRA | ||
| HL_6FEC_033 | GNRA | ||
| HL_6FEC_044 | No text annotation | ||
| HL_6FEC_034 | No text annotation | ||
| HL_6FEC_035 | No text annotation | ||
| HL_6FEC_036 | No text annotation | ||
| HL_6FEC_037 | GNRA variation | ||
| HL_6FEC_038 | No text annotation | ||
| HL_6FEC_047 | No text annotation | ||
| HL_6FEC_039 | tRNA anticodon loop | ||
| HL_6FEC_040 | No text annotation | ||
| HL_6FEC_048 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6FEC_089 | Tandem non-canonical cWW pairs | ||
| IL_6FEC_001 | Isolated non-canonical cWW pair | ||
| IL_6FEC_002 | Isolated non-canonical cWW pair | ||
| IL_6FEC_003 | Double sheared | ||
| IL_6FEC_004 | No text annotation | ||
| IL_6FEC_005 | Minor groove platform | ||
| IL_6FEC_006 | No text annotation | ||
| IL_6FEC_007 | No text annotation | ||
| IL_6FEC_008 | Triple non-canonical cWW pairs | ||
| IL_6FEC_106 | No text annotation | ||
| IL_6FEC_009 | Isolated non-canonical cWW pair | ||
| IL_6FEC_090 | No text annotation | ||
| IL_6FEC_010 | No text annotation | ||
| IL_6FEC_011 | tWH-tWH-tHW-tHW | ||
| IL_6FEC_012 | Isolated non-canonical cWW pair | ||
| IL_6FEC_013 | No text annotation | ||
| IL_6FEC_014 | Isolated non-canonical cWW pair | ||
| IL_6FEC_015 | Tandem non-canonical cWW pairs | ||
| IL_6FEC_091 | Single stack bend | ||
| IL_6FEC_016 | No text annotation | ||
| IL_6FEC_107 | Single bulged A | ||
| IL_6FEC_017 | Isolated non-canonical cWW pair | ||
| IL_6FEC_018 | Tandem non-canonical cWW pairs | ||
| IL_6FEC_092 | Isolated non-canonical cWW pair | ||
| IL_6FEC_108 | Kink-turn with non-sequential stacking | ||
| IL_6FEC_019 | No text annotation | ||
| IL_6FEC_020 | No text annotation | ||
| IL_6FEC_021 | No text annotation | ||
| IL_6FEC_022 | Isolated cWH basepair | ||
| IL_6FEC_023 | Isolated near basepair | ||
| IL_6FEC_024 | Single bulged U | ||
| IL_6FEC_025 | C-loop with extra cWW pair | ||
| IL_6FEC_026 | No text annotation | ||
| IL_6FEC_093 | No text annotation | ||
| IL_6FEC_109 | No text annotation | ||
| IL_6FEC_027 | No text annotation | ||
| IL_6FEC_028 | No text annotation | ||
| IL_6FEC_029 | No text annotation | ||
| IL_6FEC_094 | No text annotation | ||
| IL_6FEC_030 | Kink-turn related | ||
| IL_6FEC_031 | Isolated non-canonical cWW pair | ||
| IL_6FEC_032 | Isolated non-canonical cWW pair | ||
| IL_6FEC_033 | tSH-tHW-tHS | ||
| IL_6FEC_034 | Isolated non-canonical cWW pair | ||
| IL_6FEC_035 | No text annotation | ||
| IL_6FEC_036 | Major groove minor groove platform with extra cWW | ||
| IL_6FEC_110 | No text annotation | ||
| IL_6FEC_095 | No text annotation | ||
| IL_6FEC_037 | No text annotation | ||
| IL_6FEC_096 | No text annotation | ||
| IL_6FEC_097 | No text annotation | ||
| IL_6FEC_038 | Single stack bend | ||
| IL_6FEC_039 | No text annotation | ||
| IL_6FEC_040 | Major groove platform; stack outside cWW | ||
| IL_6FEC_098 | Isolated non-canonical cWW pair | ||
| IL_6FEC_041 | Tandem non-canonical cWW pairs | ||
| IL_6FEC_111 | Single bulged U | ||
| IL_6FEC_042 | Tandem non-canonical cWW pairs | ||
| IL_6FEC_043 | Tandem non-canonical cWW pairs | ||
| IL_6FEC_044 | Tandem non-canonical cWW pairs | ||
| IL_6FEC_099 | Isolated non-canonical cWW pair | ||
| IL_6FEC_045 | Kink-turn | ||
| IL_6FEC_046 | Other IL | ||
| IL_6FEC_047 | tSH-tHW-tHS | ||
| IL_6FEC_100 | No text annotation | ||
| IL_6FEC_048 | No text annotation | ||
| IL_6FEC_049 | Tandem non-canonical cWW pairs | ||
| IL_6FEC_050 | Isolated non-canonical cWW pair | ||
| IL_6FEC_051 | Single bulged C | ||
| IL_6FEC_052 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6FEC_053 | Isolated non-canonical cWW pair | ||
| IL_6FEC_112 | Single bulged A | ||
| IL_6FEC_054 | Single bulged G | ||
| IL_6FEC_055 | No text annotation | ||
| IL_6FEC_056 | Isolated non-canonical cWW pair | ||
| IL_6FEC_057 | Minor groove platform | ||
| IL_6FEC_113 | No text annotation | ||
| IL_6FEC_058 | No text annotation | ||
| IL_6FEC_114 | No text annotation | ||
| IL_6FEC_059 | Single stack bend | ||
| IL_6FEC_060 | Single bulged U | ||
| IL_6FEC_061 | Tandem non-canonical cWW pairs | ||
| IL_6FEC_101 | No text annotation | ||
| IL_6FEC_062 | No text annotation | ||
| IL_6FEC_063 | Minor groove platform | ||
| IL_6FEC_064 | Single bulged A | ||
| IL_6FEC_065 | Isolated cWH basepair | ||
| IL_6FEC_066 | Minor groove platform | ||
| IL_6FEC_067 | No text annotation | ||
| IL_6FEC_068 | No text annotation | ||
| IL_6FEC_102 | No text annotation | ||
| IL_6FEC_069 | No text annotation | ||
| IL_6FEC_103 | No text annotation | ||
| IL_6FEC_070 | No text annotation | ||
| IL_6FEC_071 | Single stack bend | ||
| IL_6FEC_072 | No text annotation | ||
| IL_6FEC_073 | Isolated non-canonical cWW pair | ||
| IL_6FEC_104 | No text annotation | ||
| IL_6FEC_074 | 180 degree turn | ||
| IL_6FEC_075 | Isolated non-canonical cWW pair | ||
| IL_6FEC_076 | No text annotation | ||
| IL_6FEC_077 | No text annotation | ||
| IL_6FEC_078 | No text annotation | ||
| IL_6FEC_115 | No text annotation | ||
| IL_6FEC_079 | No text annotation | ||
| IL_6FEC_080 | Isolated non-canonical cWW pair | ||
| IL_6FEC_081 | Double sheared with non-canonical cWW | ||
| IL_6FEC_105 | Double sheared | ||
| IL_6FEC_082 | Single bulged U | ||
| IL_6FEC_083 | Isolated non-canonical cWW pair | ||
| IL_6FEC_084 | Double sheared | ||
| IL_6FEC_085 | Tandem non-canonical cWW pairs | ||
| IL_6FEC_086 | Triple sheared | ||
| IL_6FEC_087 | No text annotation | ||
| IL_6FEC_088 | Single stack bend |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6FEC_001 | No text annotation | ||
| J3_6FEC_013 | No text annotation | ||
| J3_6FEC_014 | No text annotation | ||
| J3_6FEC_019 | No text annotation | ||
| J3_6FEC_002 | No text annotation | ||
| J3_6FEC_015 | No text annotation | ||
| J3_6FEC_020 | No text annotation | ||
| J3_6FEC_016 | No text annotation | ||
| J3_6FEC_003 | No text annotation | ||
| J3_6FEC_004 | No text annotation | ||
| J3_6FEC_005 | No text annotation | ||
| J3_6FEC_006 | No text annotation | ||
| J3_6FEC_007 | No text annotation | ||
| J3_6FEC_008 | No text annotation | ||
| J3_6FEC_017 | No text annotation | ||
| J3_6FEC_021 | No text annotation | ||
| J3_6FEC_009 | No text annotation | ||
| J3_6FEC_010 | No text annotation | ||
| J3_6FEC_011 | No text annotation | ||
| J3_6FEC_018 | No text annotation | ||
| J3_6FEC_012 | No text annotation | ||
| J4_6FEC_001 | No text annotation | ||
| J4_6FEC_002 | No text annotation | ||
| J4_6FEC_004 | tRNA junction | ||
| J4_6FEC_003 | No text annotation | ||
| J5_6FEC_001 | No text annotation | ||
| J5_6FEC_005 | No text annotation | ||
| J5_6FEC_002 | No text annotation | ||
| J5_6FEC_006 | No text annotation | ||
| J5_6FEC_003 | No text annotation | ||
| J5_6FEC_007 | No text annotation | ||
| J5_6FEC_004 | No text annotation |
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