HL_6FEC_002

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

6FEC|1|A|G|75

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FEC_002 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2387

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6FEC|1|A|C|69
6FEC|1|A|G|70
6FEC|1|A|G|71
6FEC|1|A|C|72
6FEC|1|A|C|73
6FEC|1|A|G|74
6FEC|1|A|G|75
6FEC|1|A|U|76
6FEC|1|A|A|77
6FEC|1|A|C|78
6FEC|1|A|A|79
6FEC|1|A|G|80

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain q

40S ribosomal protein S6