HL_6FEC_004

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CCUUUGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FEC_004 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3484

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

6FEC|1|A|C|194
6FEC|1|A|C|195
6FEC|1|A|U|196
6FEC|1|A|U|197
6FEC|1|A|U|198
6FEC|1|A|G|199
6FEC|1|A|U|200
6FEC|1|A|G|201

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain o

40S ribosomal protein S8