HL_6FEC_010

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

6FEC|1|A|C|440, 6FEC|1|A|G|441

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FEC|1|A|C|431
6FEC|1|A|C|432
6FEC|1|A|U|433
6FEC|1|A|G|434
6FEC|1|A|A|435
6FEC|1|A|G|436
6FEC|1|A|A|437
6FEC|1|A|A|438
6FEC|1|A|A|439
6FEC|1|A|C|440
6FEC|1|A|G|441
6FEC|1|A|G|442

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S4, X isoform

Chain o

40S ribosomal protein S8

Chain q

40S ribosomal protein S6