HL_6FEC_031

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

AGCGGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FEC_031 not in the Motif Atlas

Geometric match to HL_6WPI_001

Geometric discrepancy: 0.2877

The information below is about HL_6WPI_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6FEC|1|A|A|1417
6FEC|1|A|G|1418
6FEC|1|A|C|1419
6FEC|1|A|G|1420
6FEC|1|A|G|1421
6FEC|1|A|U|1422

Current chains

Chain A

18S ribosomal RNA

Nearby chains