HL_6FEC_032

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FEC_032 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.4122

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6FEC|1|A|C|1456
6FEC|1|A|G|1457
6FEC|1|A|U|1458
6FEC|1|A|U|1459
6FEC|1|A|C|1460
6FEC|1|A|A|1461
6FEC|1|A|G|1462

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 9

EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT D

Chain e

40S ribosomal protein S17

Chain m

Receptor of activated protein C kinase 1