HL_6FEC_039
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FEC_039 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.2486
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6FEC|1|N|G|30
6FEC|1|N|C|31
6FEC|1|N|C|32
6FEC|1|N|C|33
6FEC|1|N|A|34
6FEC|1|N|U|35
6FEC|1|N|A|36
6FEC|1|N|A|37
6FEC|1|N|C|38
Current chains
- Chain N
- Transfer RNA (75-MER)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain F
- Messenger RNA (26-MER)
- Chain H
- 40S ribosomal protein S16
- Chain P
- Eukaryotic translation initiation factor 2 subunit 1
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