HL_6FEC_044
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GAUUGCAAUUAUUC
- Length
- 14 nucleotides
- Bulged bases
- 6FEC|1|A|U|1616, 6FEC|1|A|U|1617, 6FEC|1|A|A|1618
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FEC_044 not in the Motif Atlas
- Geometric match to HL_6ZDU_001
- Geometric discrepancy: 0.3642
- The information below is about HL_6ZDU_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99769.3
- Basepair signature
- cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6FEC|1|A|G|1608
6FEC|1|A|A|1609
6FEC|1|A|U|1610
6FEC|1|A|U|1611
6FEC|1|A|G|1612
6FEC|1|A|C|1613
6FEC|1|A|A|1614
6FEC|1|A|A|1615
6FEC|1|A|U|1616
6FEC|1|A|U|1617
6FEC|1|A|A|1618
6FEC|1|A|U|1619
6FEC|1|A|U|1620
6FEC|1|A|C|1621
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain J
- 40S ribosomal protein S29
- Chain L
- 40S ribosomal protein S18
- Chain R
- 40S ribosomal protein S19
- Chain n
- 40S ribosomal protein S15
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