HL_6FKR_076

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

6FKR|1|1a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FKR_076 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0774

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6FKR|1|1a|G|259
6FKR|1|1a|G|260
6FKR|1|1a|U|261
6FKR|1|1a|A|262
6FKR|1|1a|A|263
6FKR|1|1a|U|264
6FKR|1|1a|G|265
6FKR|1|1a|G|266
6FKR|1|1a|C|267

Current chains

Chain 1a

16 ribosomal RNA

Nearby chains

Chain 1q

30S ribosomal protein S17

Chain 1t

30S ribosomal protein S20