HL_6FKR_095

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6FKR|1|1a|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FKR_095 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.098

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

6FKR|1|1a|G|1089
6FKR|1|1a|U|1090
6FKR|1|1a|U|1091
6FKR|1|1a|A|1092
6FKR|1|1a|A|1093
6FKR|1|1a|G|1094
6FKR|1|1a|U|1095
6FKR|1|1a|C|1096

Current chains

Chain 1a

16 ribosomal RNA

Nearby chains

Chain 1b

30S ribosomal protein S2

Chain 1g

30S ribosomal protein S7