HL_6FKR_186
3D structure
- PDB id
- 6FKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GCUCAAC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FKR_186 not in the Motif Atlas
- Homologous match to HL_4LFB_014
- Geometric discrepancy: 0.1053
- The information below is about HL_4LFB_014
- Detailed Annotation
- GNRA-like with tWH
- Broad Annotation
- GNRA
- Motif group
- HL_92337.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6FKR|1|2a|G|617
6FKR|1|2a|C|618
6FKR|1|2a|U|619
6FKR|1|2a|C|620
6FKR|1|2a|A|621
6FKR|1|2a|A|622
6FKR|1|2a|C|623
Current chains
- Chain 2a
- 16 ribosomal RNA
Nearby chains
- Chain 2d
- 30S ribosomal protein S4
- Chain 2p
- 30S ribosomal protein S16
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