3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
AGCAGUU
Length
7 nucleotides
Bulged bases
6FRK|1|5|G|2421, 6FRK|1|5|U|2425
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6FRK_040 not in the Motif Atlas
Homologous match to HL_5TBW_032
Geometric discrepancy: 0.2251
The information below is about HL_5TBW_032
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_40756.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

6FRK|1|5|A|2420
6FRK|1|5|G|2421
6FRK|1|5|C|2422
6FRK|1|5|A|2423
6FRK|1|5|G|2424
6FRK|1|5|U|2425
6FRK|1|5|U|2426

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain P
Ribosomal protein uL22
Chain R
Ribosomal protein eL19
Chain l
Ribosomal protein eL39

Coloring options:


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