RNA 3D Hub //

6FRK Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6FRK_0051/2/12:23No text annotation
homologous
HL_5E6M_001
HL_99769.3
HL_6FRK_0061/2/31:39tRNA anticodon loop
homologous
HL_4TUE_034
HL_06059.7
HL_6FRK_0081/5/37:44No text annotation
homologous
HL_5TBW_001
NA
HL_6FRK_0091/5/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_6FRK_0101/5/89:95No text annotation
homologous
HL_8C3A_003
NA
HL_6FRK_0111/5/131:137No text annotation
homologous
HL_8C3A_004
NA
HL_6FRK_0121/5/204:211T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_6FRK_0131/5/222:226No text annotation
homologous
HL_8C3A_006
NA
HL_6FRK_0141/5/230:238T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_6FRK_0151/5/289:298No text annotation
homologous
HL_8C3A_008
NA
HL_6FRK_0161/5/314:323Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_6FRK_0171/5/368:373GNRA
homologous
HL_8C3A_010
NA
HL_6FRK_0181/5/393:398GNRA
homologous
HL_5TBW_011
NA
HL_6FRK_0211/5/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_5TBW_014
NA
HL_6FRK_0871/5/1364:1373No text annotation
HL_6FRK_0231/5/1389:1394GNRA
homologous
HL_8C3A_016
NA
HL_6FRK_0261/5/1479:1486No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_6FRK_0271/5/1561:1566GNRA
homologous
HL_5TBW_019
NA
HL_6FRK_0281/5/1593:1602No text annotation
homologous
HL_5TBW_020
NA
HL_6FRK_0291/5/1627:1635No text annotation
homologous
HL_5TBW_021
NA
HL_6FRK_0301/5/1675:1680Externally structured
homologous
HL_8C3A_022
NA
HL_6FRK_0321/5/1814:1823No text annotation
HL_6FRK_0331/5/1864:1870GNRA
homologous
HL_5TBW_025
NA
HL_6FRK_0341/5/1886:1893No text annotation
homologous
HL_5TBW_026
NA
HL_6FRK_0381/5/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_6FRK_0391/5/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_5TBW_031
NA
HL_6FRK_0401/5/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_6FRK_0411/5/2458:2463GNRA variation
homologous
HL_8C3A_033
NA
HL_6FRK_0431/5/2523:2532No text annotation
homologous
HL_5TBW_035
NA
HL_6FRK_0451/5/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_6FRK_0461/5/2624:2632No text annotation
homologous
HL_8C3A_037
NA
HL_6FRK_0471/5/2664:2670No text annotation
homologous
HL_8C3A_038
NA
HL_6FRK_0491/5/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_6FRK_0501/5/2792:2799No text annotation
homologous
HL_8C3A_041
NA
HL_6FRK_0511/5/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_6FRK_0521/5/2872:2877No text annotation
geometric
HL_7RQB_042
NA
HL_6FRK_0531/5/3614:3618No text annotation
homologous
HL_5TBW_045
NA
HL_6FRK_0541/5/3639:3649No text annotation
homologous
HL_5TBW_046
NA
HL_6FRK_0551/5/3668:3674GNRA
homologous
HL_8C3A_047
NA
HL_6FRK_0561/5/3724:3729GNRA
homologous
HL_8C3A_048
NA
HL_6FRK_0571/5/3757:3767No text annotation
homologous
HL_5TBW_049
NA
HL_6FRK_0581/5/3796:3804No text annotation
homologous
HL_8C3A_050
NA
HL_6FRK_0591/5/3873:3882No text annotation
homologous
HL_5TBW_051
NA
HL_6FRK_0631/5/4193:4201No text annotation
homologous
HL_8C3A_055
NA
HL_6FRK_0641/5/4210:4222No text annotation
homologous
HL_5TBW_055
NA
HL_6FRK_0651/5/4250:4258No text annotation
homologous
HL_8C3A_057
NA
HL_6FRK_0661/5/4270:4277Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_6FRK_0671/5/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_6FRK_0681/5/4321:4326GNRA
homologous
HL_5TBW_059
NA
HL_6FRK_0691/5/4352:4362No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_6FRK_0701/5/4417:4425No text annotation
homologous
HL_5TBW_061
NA
HL_6FRK_0711/5/4474:4481No text annotation
homologous
HL_5TBW_062
NA
HL_6FRK_0721/5/4497:4503No text annotation
geometric
HL_5TBW_063
NA
HL_6FRK_0731/5/4540:4545GNRA
homologous
HL_5TBW_064
NA
HL_6FRK_0741/5/4603:4608GNRA
geometric
HL_4AOB_003
HL_37824.8
HL_6FRK_0751/5/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_6FRK_0761/5/4688:4702No text annotation
homologous
HL_8C3A_068
NA
HL_6FRK_0771/5/4907:4914No text annotation
geometric
HL_5TBW_006
NA
HL_6FRK_0781/5/4975:4983No text annotation
geometric
HL_5J7L_201
HL_64690.6
HL_6FRK_0901/7/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_6FRK_0801/7/36:41No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_6FRK_0811/7/86:91GNRA
homologous
HL_5TBW_186
NA
HL_6FRK_0821/8/47:56Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_93438.2
HL_6FRK_0831/8/68:90No text annotation
HL_6FRK_0841/8/107:112No text annotation

Problematic loops

#loop idProblemSequence
HL_6FRK_001GNRA wlth tandem sheared
HL_6FRK_002No text annotation
HL_6FRK_003GNRA variation
HL_6FRK_004GNRA
HL_6FRK_007T-loop with 2 stacked bulged bases
HL_6FRK_086No text annotation
HL_6FRK_019GNRA
HL_6FRK_020GNRA
HL_6FRK_022No text annotation
HL_6FRK_024No text annotation
HL_6FRK_025Externally structured
HL_6FRK_031GNRA
HL_6FRK_035No text annotation
HL_6FRK_036GNRA wlth tandem sheared
HL_6FRK_037No text annotation
HL_6FRK_042No text annotation
HL_6FRK_044GNRA
HL_6FRK_048No text annotation
HL_6FRK_088No text annotation
HL_6FRK_060No text annotation
HL_6FRK_061UNCG
HL_6FRK_062No text annotation
HL_6FRK_089No text annotation
HL_6FRK_079No text annotation
HL_6FRK_091No text annotation
HL_6FRK_085GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6FRK_0111/5/6:7,
1/8/149:151		Single bulged C
homologous
IL_8C3A_002
NA
IL_6FRK_0121/5/12:14,
1/8/143:144		Single bulged U
homologous
IL_8C3A_003
NA
IL_6FRK_0131/5/16:18,
1/8/139:141		Isolated cWH basepair
geometric
IL_4J50_003
IL_10167.6
IL_6FRK_0141/5/26:27,
1/5/55:57		Single stack bend
homologous
IL_5TBW_004
NA
IL_6FRK_0151/5/30:37,
1/5/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_84694.2
IL_6FRK_0161/5/81:88,
1/5/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_6FRK_0171/5/118:121,
1/5/152:153		Multiple bulged bases
geometric
IL_1FUF_002
IL_82107.5
IL_6FRK_1791/5/118:122,
1/5/147:153		No text annotation
IL_6FRK_0181/5/121:122,
1/5/147:152		No text annotation
geometric
IL_5TBW_007
NA
IL_6FRK_1801/5/125:126,
1/5/142:144		No text annotation
IL_6FRK_0201/5/160:161,
1/5/274:276		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_6FRK_0211/5/168:173,
1/5/263:267		No text annotation
IL_6FRK_0241/5/195:196,
1/5/244:246		Single bulged C
geometric
IL_1S03_006
IL_61258.15
IL_6FRK_0251/5/199:201,
1/5/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_6FRK_0261/5/339:342,
1/8/32:33		Minor groove platform
geometric
IL_7RQB_073
NA
IL_6FRK_0271/5/348:350,
1/8/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_6FRK_0281/5/387:390,
1/5/401:414		No text annotation
homologous
IL_5TBW_014
NA
IL_6FRK_0291/5/415:421,
1/8/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_6FRK_0301/5/443:446,
1/5/1300:1304		No text annotation
geometric
IL_7MLW_007
IL_99358.1
IL_6FRK_0331/5/466:472,
1/5/682:689		No text annotation
IL_6FRK_0351/5/488:490,
1/5/664:668		Minor groove platform with extra cWW
geometric
IL_4V88_411
NA
IL_6FRK_0421/5/708:709,
1/5/1287:1289		Single bulged G
geometric
IL_4LFB_036
IL_00225.14
IL_6FRK_0431/5/722:724,
1/5/942:946		No text annotation
IL_6FRK_0441/5/726:731,
1/5/938:940		No text annotation
IL_6FRK_0451/5/731:735,
1/5/928:938		No text annotation
IL_6FRK_1821/5/735:737,
1/5/927:928		No text annotation
geometric
IL_8VTW_005
NA
IL_6FRK_0461/5/736:738,
1/5/926:927		Single base bend
geometric
IL_5IBB_340
IL_90729.1
IL_6FRK_0511/5/1074:1077,
1/5/1234:1236		No text annotation
geometric
IL_4V84_070
NA
IL_6FRK_0551/5/1086:1087,
1/5/1209:1211		Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_6FRK_0581/5/1357:1361,
1/5/1376:1382		No text annotation
IL_6FRK_0591/5/1425:1429,
1/5/1455:1460		No text annotation
IL_6FRK_0611/5/1467:1468,
1/5/1496:1498		Single bulged A
homologous
IL_8C3A_026
NA
IL_6FRK_0621/5/1474:1476,
1/5/1489:1490		Single base bend
geometric
IL_5IBB_340
IL_90729.1
IL_6FRK_0631/5/1520:1522,
1/5/1655:1657		Isolated non-canonical cWW pair
geometric
IL_5TBW_027
NA
IL_6FRK_0641/5/1522:1526,
1/5/1648:1655		tHW-tHW cross-strand stack
homologous
IL_5TBW_028
NA
IL_6FRK_0651/5/1550:1551,
1/5/1576:1578		Single bulged G
homologous
IL_8C3A_032
NA
IL_6FRK_0661/5/1551:1555,
1/5/1572:1576		Triple sheared
geometric
IL_4V9F_027
IL_50730.2
IL_6FRK_0671/5/1586:1589,
1/5/1605:1607		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_6FRK_0681/5/1590:1592,
1/5/1603:1604		Single bulged U
homologous
IL_8C3A_035
NA
IL_6FRK_0691/5/1624:1626,
1/5/1636:1640		No text annotation
homologous
IL_8C3A_036
NA
IL_6FRK_0701/5/1671:1673,
1/5/1682:1684		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_6FRK_0711/5/1686:1688,
1/5/1848:1851		No text annotation
IL_6FRK_0721/5/1694:1725,
1/5/1837:1842		No text annotation
IL_6FRK_0731/5/1732:1737,
1/5/1792:1797		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_6FRK_0741/5/1737:1738,
1/5/1790:1792		Minor groove platform
homologous
IL_8C3A_042
NA
IL_6FRK_0751/5/1739:1744,
1/5/1786:1789		C-loop
homologous
IL_5TBW_040
NA
IL_6FRK_0761/5/1746:1749,
1/5/1781:1784		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_6FRK_0771/5/1749:1751,
1/5/1779:1781		Isolated non-canonical cWW pair
homologous
IL_5TBW_042
NA
IL_6FRK_0801/5/1858:1860,
1/5/1874:1876		Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_6FRK_0821/5/1905:1909,
1/5/2067:2071		UAA/GAN
homologous
IL_5TBW_048
NA
IL_6FRK_0831/5/1911:1918,
1/5/2064:2065		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_6FRK_0841/5/1918:1920,
1/5/2063:2064		No text annotation
IL_6FRK_0851/5/1920:1922,
1/5/2062:2063		No text annotation
geometric
IL_8CRE_390
IL_61258.15
IL_6FRK_0861/5/1926:1933,
1/5/2053:2058		No text annotation
homologous
IL_5TBW_051
NA
IL_6FRK_0871/5/1933:1944,
1/5/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_6FRK_0881/5/1945:1948,
1/5/2035:2037		Intercalated cWW
geometric
IL_7A0S_044
IL_31737.3
IL_6FRK_0891/5/1957:1965,
1/5/2022:2026		Kink-turn
geometric
IL_4V9F_042
IL_99692.2
IL_6FRK_0921/5/2083:2085,
1/5/2272:2273		Single bulged C
geometric
IL_3W3S_001
IL_61258.15
IL_6FRK_1861/5/2087:2128,
1/5/2246:2270		No text annotation
IL_6FRK_0931/5/2290:2292,
1/5/2342:2345		No text annotation
homologous
IL_8C3A_061
NA
IL_6FRK_0941/5/2299:2301,
1/5/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_6FRK_0951/5/2302:2309,
1/5/2329:2333		Kink-turn
homologous
IL_8C3A_063
NA
IL_6FRK_0961/5/2312:2314,
1/5/2325:2326		Single bulged A
homologous
IL_5TBW_060
NA
IL_6FRK_0971/5/2358:2364,
1/5/3858:3863		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_6FRK_0981/5/2415:2419,
1/5/2427:2429		C-loop
geometric
IL_7A0S_047
IL_83150.2
IL_6FRK_0991/5/2446:2450,
1/5/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_6FRK_1011/5/2542:2547,
1/5/2772:2774		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_6FRK_1021/5/2589:2593,
1/5/2752:2756		Triple sheared
homologous
IL_5TBW_067
NA
IL_6FRK_1031/5/2613:2614,
1/5/2724:2726		Single bulged A
geometric
IL_3MJA_001
NA
IL_6FRK_1041/5/2614:2615,
1/5/2722:2724		Single stack bend
homologous
IL_8C3A_076
NA
IL_6FRK_1051/5/2646:2648,
1/5/2685:2688		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_85599.2
IL_6FRK_1061/5/2651:2653,
1/5/2681:2682		Single bulged G
geometric
IL_7D7W_002
IL_00225.14
IL_6FRK_1071/5/2656:2662,
1/5/2672:2678		Kink-turn
homologous
IL_5TBW_073
NA
IL_6FRK_1091/5/2832:2838,
1/5/3850:3853		No text annotation
homologous
IL_5TBW_074
NA
IL_6FRK_1101/5/2844:2846,
1/5/3842:3844		No text annotation
homologous
IL_8C3A_081
NA
IL_6FRK_1111/5/2847:2850,
1/5/3840:3841		Major groove platform; stack outside cWW
homologous
IL_8C3A_082
NA
IL_6FRK_1871/5/2847:2855,
1/5/3837:3841		No text annotation
homologous
IL_8P9A_305
IL_22854.4
IL_6FRK_1121/5/2850:2855,
1/5/3837:3840		Intercalated tWH
geometric
IL_5J7L_307
IL_76758.2
IL_6FRK_1131/5/2867:2872,
1/5/2877:2883		No text annotation
homologous
IL_8C3A_084
NA
IL_6FRK_1141/5/2889:2891,
1/5/3610:3612		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_6FRK_1151/5/2896:2897,
1/5/3602:3605		No text annotation
homologous
IL_8C3A_086
NA
IL_6FRK_1161/5/2901:2905,
1/5/3589:3598		No text annotation
IL_6FRK_1171/5/3632:3633,
1/5/3827:3829		Single bulged A
homologous
IL_8C3A_087
NA
IL_6FRK_1181/5/3660:3665,
1/5/3677:3684		Kink-turn related
homologous
IL_5TBW_083
NA
IL_6FRK_1191/5/3700:3703,
1/5/3749:3750		No text annotation
homologous
IL_8C3A_089
NA
IL_6FRK_1201/5/3704:3705,
1/5/3745:3748		Major groove intercalation
homologous
IL_5TBW_085
NA
IL_6FRK_1211/5/3708:3714,
1/5/3739:3742		No text annotation
IL_6FRK_1221/5/3714:3721,
1/5/3732:3739		No text annotation
IL_6FRK_1231/5/3780:3781,
1/5/3811:3814		Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_6FRK_1241/5/3781:3792,
1/5/3808:3811		No text annotation
homologous
IL_5TBW_090
NA
IL_6FRK_1251/5/3895:3898,
1/5/4563:4565		Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_6FRK_1261/5/3900:3902,
1/5/4558:4561		No text annotation
homologous
IL_8C3A_097
NA
IL_6FRK_1271/5/3913:3915,
1/5/4388:4389		Single bulged U
homologous
IL_5TBW_093
NA
IL_6FRK_1281/5/3916:3917,
1/5/4384:4387		Minor groove platform
homologous
IL_5TBW_094
NA
IL_6FRK_1291/5/3927:3929,
1/5/4181:4184		No text annotation
homologous
IL_8C3A_100
NA
IL_6FRK_1301/5/4082:4088,
1/5/4161:4164		No text annotation
homologous
IL_5TBW_096
NA
IL_6FRK_1321/5/4191:4192,
1/5/4202:4204		Single bulged A
homologous
IL_8C3A_107
NA
IL_6FRK_1331/5/4243:4245,
1/5/4263:4267		Isolated tHS basepair with bulges
geometric
IL_5TBW_099
NA
IL_6FRK_1341/5/4291:4293,
1/5/4317:4318		Single bulged A
geometric
IL_4V88_399
NA
IL_6FRK_1351/5/4295:4298,
1/5/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_6FRK_1361/5/4347:4350,
1/5/4364:4365		Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_6FRK_1371/5/4400:4401,
1/5/4442:4444		Major groove platform
geometric
IL_5TBW_102
NA
IL_6FRK_1381/5/4401:4403,
1/5/4440:4442		Isolated non-canonical cWW pair
homologous
IL_5TBW_103
NA
IL_6FRK_1391/5/4403:4405,
1/5/4439:4440		Major groove platform
geometric
IL_5TBW_104
NA
IL_6FRK_1401/5/4405:4407,
1/5/4435:4439		Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_6FRK_1411/5/4412:4416,
1/5/4426:4430		Triple sheared
homologous
IL_5TBW_106
NA
IL_6FRK_1421/5/4453:4454,
1/5/4526:4528		Major groove platform
homologous
IL_5TBW_107
NA
IL_6FRK_1431/5/4456:4458,
1/5/4520:4524		No text annotation
homologous
IL_8C3A_116
NA
IL_6FRK_1441/5/4458:4459,
1/5/4517:4520		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_6FRK_1451/5/4466:4468,
1/5/4489:4491		No text annotation
geometric
IL_4KR9_001
NA
IL_6FRK_1881/5/4466:4470,
1/5/4485:4491		No text annotation
IL_6FRK_1461/5/4468:4470,
1/5/4485:4489		No text annotation
geometric
IL_3DD2_004
IL_55516.2
IL_6FRK_1471/5/4495:4497,
1/5/4503:4505		Isolated non-canonical cWW pair
homologous
IL_5TBW_112
NA
IL_6FRK_1481/5/4537:4538,
1/5/4547:4549		Single bulged A
geometric
IL_2VPL_002
IL_31462.7
IL_6FRK_1491/5/4580:4582,
1/5/4721:4723		No text annotation
geometric
IL_3ICQ_003
NA
IL_6FRK_1501/5/4582:4585,
1/5/4717:4721		Double sheared
homologous
IL_5TBW_114
NA
IL_6FRK_1511/5/4590:4592,
1/5/4618:4620		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_6FRK_1521/5/4596:4603,
1/5/4608:4614		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_6FRK_1531/5/4624:4629,
1/5/4669:4673		No text annotation
IL_6FRK_1541/5/4632:4637,
1/5/4662:4666		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_6FRK_1551/5/4638:4640,
1/5/4659:4661		Isolated cWH basepair
geometric
IL_3R1C_018
IL_10167.6
IL_6FRK_1561/5/4641:4642,
1/5/4655:4658		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_6FRK_1891/5/4681:4685,
1/5/4705:4709		UAA/GAN
homologous
IL_8P9A_348
IL_38507.2
IL_6FRK_1901/5/4740:4746,
1/5/4954:4959		No text annotation
IL_6FRK_1911/5/4755:4765,
1/5/4869:4878		No text annotation
IL_6FRK_1611/5/4885:4888,
1/5/4931:4934		Tandem non-canonical cWW pairs
geometric
IL_4WF9_110
IL_51479.1
IL_6FRK_1621/5/4891:4896,
1/5/4924:4928		No text annotation
IL_6FRK_1641/5/4972:4975,
1/5/4983:4986		Tandem non-canonical cWW pairs
homologous
IL_8C3A_135
NA
IL_6FRK_1651/5/4996:4997,
1/5/5053:5055		Single bulged U
homologous
IL_8C3A_137
NA
IL_6FRK_1661/5/5000:5002,
1/5/5045:5050		No text annotation
homologous
IL_8C3A_138
NA
IL_6FRK_1671/5/5003:5009,
1/5/5039:5044		No text annotation
IL_6FRK_1681/5/5012:5014,
1/5/5035:5036		Single bulged C
geometric
IL_4WF9_035
IL_61258.15
IL_6FRK_1691/5/5014:5017,
1/5/5032:5035		Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_6FRK_1701/7/15:16,
1/7/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_6FRK_1711/7/21:27,
1/7/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_6FRK_1721/7/28:29,
1/7/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_6FRK_1731/7/32:36,
1/7/41:45		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_6FRK_1741/7/71:78,
1/7/98:104		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_6FRK_1751/7/79:81,
1/7/95:97		Isolated non-canonical cWW pair
geometric
IL_4V88_470
NA
IL_6FRK_1761/7/82:85,
1/7/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_6FRK_1771/8/64:66,
1/8/92:95		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA

Problematic loops

#loop idProblemSequence
IL_6FRK_001Isolated cWH basepair
IL_6FRK_002No text annotation
IL_6FRK_003Not an internal loop
IL_6FRK_178No text annotation
IL_6FRK_004Single bulged G
IL_6FRK_005No text annotation
IL_6FRK_006Isolated non-canonical cWW pair
IL_6FRK_007Tandem non-canonical cWW pairs
IL_6FRK_008Single bulged A
IL_6FRK_009No text annotation
IL_6FRK_010tSH-tHW-tHS-cWW
IL_6FRK_019Isolated non-canonical cWW pair
IL_6FRK_022Single stack bend
IL_6FRK_023No text annotation
IL_6FRK_031Single bulged C
IL_6FRK_032Isolated non-canonical cWW pair
IL_6FRK_034No text annotation
IL_6FRK_036No text annotation
IL_6FRK_037Single stack bend
IL_6FRK_038No text annotation
IL_6FRK_039Single stack bend
IL_6FRK_040Single bulged A
IL_6FRK_041Isolated non-canonical cWW pair
IL_6FRK_181Multiple bulged bases
IL_6FRK_047Isolated non-canonical cWW pair
IL_6FRK_048No text annotation
IL_6FRK_183No text annotation
IL_6FRK_049No text annotation
IL_6FRK_050No text annotation
IL_6FRK_052No text annotation
IL_6FRK_053No text annotation
IL_6FRK_054Tandem non-canonical cWW pairs
IL_6FRK_056Single stack bend
IL_6FRK_057Isolated near basepair
IL_6FRK_060Double sheared
IL_6FRK_078No text annotation
IL_6FRK_184No text annotation
IL_6FRK_079No text annotation
IL_6FRK_185Tandem non-canonical cWW pairs
IL_6FRK_193Isolated non-canonical cWW pair
IL_6FRK_081No text annotation
IL_6FRK_090No text annotation
IL_6FRK_091Major groove platform with extra cWW
IL_6FRK_100Not an internal loop
IL_6FRK_108No text annotation
IL_6FRK_131No text annotation
IL_6FRK_194Single stack bend
IL_6FRK_157UAA/GAN with extra cWW
IL_6FRK_158No text annotation
IL_6FRK_159No text annotation
IL_6FRK_160Tandem non-canonical cWW pairs
IL_6FRK_192No text annotation
IL_6FRK_163No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6FRK_0031/5/112:116,
1/5/155:160,
1/5/276:278		No text annotation
J3_6FRK_0231/5/112:116,
1/5/155:160,
1/5/275:278		No text annotation
J3_6FRK_0241/5/196:199,
1/5/215:228,
1/5/240:244		No text annotation
J3_6FRK_0251/5/351:367,
1/5/374:379,
1/8/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_6FRK_0041/5/380:387,
1/5/414:415,
1/8/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_6FRK_0261/5/380:390,
1/5/401:415,
1/8/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_6FRK_0051/5/448:456,
1/5/700:704,
1/5/1293:1298		No text annotation
J3_6FRK_0061/5/711:713,
1/5/955:976,
1/5/1278:1285		No text annotation
J3_6FRK_0071/5/1531:1537,
1/5/1622:1624,
1/5/1640:1643		No text annotation
homologous
J3_8C3A_003
NA
J3_6FRK_0081/5/1545:1548,
1/5/1580:1584,
1/5/1609:1614		No text annotation
homologous
J3_5TBW_005
NA
J3_6FRK_0291/5/1726:1727,
1/5/1802:1806,
1/5/1832:1836		No text annotation
J3_6FRK_0101/5/2393:2399,
1/5/2805:2807,
1/5/2819:2822		No text annotation
homologous
J3_5TBW_008
NA
J3_6FRK_0111/5/2402:2405,
1/5/2785:2791,
1/5/2800:2802		No text annotation
homologous
J3_8C3A_007
NA
J3_6FRK_0121/5/2440:2445,
1/5/2515:2519,
1/5/2536:2537		No text annotation
homologous
J3_5TBW_010
NA
J3_6FRK_0301/5/2451:2456,
1/5/2465:2476,
1/5/2501:2508		No text annotation
J3_6FRK_0131/5/2549:2555,
1/5/2572:2575,
1/5/2757:2770		No text annotation
J3_6FRK_0141/5/2575:2576,
1/5/2585:2589,
1/5/2756:2757		No text annotation
homologous
J3_8C3A_054
NA
J3_6FRK_0311/5/2598:2602,
1/5/2737:2738,
1/5/2742:2747		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_6FRK_0151/5/3937:3939,
1/5/4074:4078,
1/5/4168:4173		No text annotation
geometric
J3_7A0S_009
J3_89368.5
J3_6FRK_0161/5/4091:4094,
1/5/4114:4129,
1/5/4155:4158		No text annotation
homologous
J3_8C3A_009
NA
J3_6FRK_0171/5/4228:4230,
1/5/4331:4342,
1/5/4370:4375		No text annotation
homologous
J3_8C3A_056
NA
J3_6FRK_0181/5/4241:4243,
1/5/4267:4269,
1/5/4278:4283		No text annotation
homologous
J3_5TBW_013
NA
J3_6FRK_0191/5/4463:4466,
1/5/4491:4493,
1/5/4507:4513		No text annotation
homologous
J3_5TBW_014
NA
J3_6FRK_0321/5/4748:4754,
1/5/4879:4888,
1/5/4931:4952		No text annotation
J3_6FRK_0201/5/4970:4972,
1/5/4986:4994,
1/5/5057:5063		No text annotation
J3_6FRK_0211/7/9:14,
1/7/65:66,
1/7/109:110		No text annotation
homologous
J3_5TBW_045
NA
J3_6FRK_0221/8/44:45,
1/8/58:64,
1/8/95:99		No text annotation
homologous
J3_8C3A_060
NA
J4_6FRK_0011/2/7:10,
1/2/25:27,
1/2/43:49,
1/2/65:66		tRNA junction
homologous
J4_3WQY_001
J4_70449.29
J4_6FRK_0021/5/111:112,
1/5/278:283,
1/5/304:310,
1/5/327:330		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_6FRK_0031/5/196:199,
1/5/215:222,
1/5/226:228,
1/5/240:244		No text annotation
J4_6FRK_0131/5/980:983,
1/5/1070:1074,
1/5/1236:1245,
1/5/1265:1274		No text annotation
J4_6FRK_0051/5/2365:2371,
1/5/2389:2391,
1/5/2824:2829,
1/5/3856:3857		No text annotation
J4_6FRK_0061/5/2406:2410,
1/5/2434:2439,
1/5/2538:2539,
1/5/2777:2784		No text annotation
homologous
J4_8C3A_004
NA
J4_6FRK_0071/5/2618:2619,
1/5/2637:2642,
1/5/2692:2698,
1/5/2718:2719		No text annotation
J4_6FRK_0081/5/3634:3638,
1/5/3650:3654,
1/5/3690:3694,
1/5/3821:3826		No text annotation
homologous
J4_8C3A_006
NA
J4_6FRK_0091/5/3696:3698,
1/5/3752:3754,
1/5/3770:3780,
1/5/3814:3819		No text annotation
J4_6FRK_0101/5/4230:4235,
1/5/4289:4291,
1/5/4318:4319,
1/5/4328:4331		No text annotation
J4_6FRK_0111/5/4230:4235,
1/5/4289:4293,
1/5/4317:4319,
1/5/4328:4331		No text annotation
J4_6FRK_0121/5/4587:4590,
1/5/4620:4621,
1/5/4676:4678,
1/5/4712:4715		No text annotation
J5_6FRK_0011/5/19:21,
1/8/35:42,
1/8/101:106,
1/8/113:114,
1/8/136:138		No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_6FRK_0021/5/1335:1340,
1/5/1516:1519,
1/5/1658:1661,
1/5/2288:2290,
1/5/2345:2351		No text annotation
homologous
J5_8C3A_002
NA
J5_6FRK_0031/5/2847:2863,
1/5/2887:2888,
1/5/3613:3614,
1/5/3618:3626,
1/5/3835:3841		No text annotation
J5_6FRK_0041/5/2855:2863,
1/5/2887:2888,
1/5/3613:3614,
1/5/3618:3626,
1/5/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J5_6FRK_0051/5/3903:3910,
1/5/4392:4400,
1/5/4444:4453,
1/5/4528:4534,
1/5/4552:4557		No text annotation
J5_6FRK_0061/5/3920:3923,
1/5/4188:4191,
1/5/4204:4205,
1/5/4227:4228,
1/5/4375:4381		No text annotation
homologous
J5_8C3A_006
NA
J6_6FRK_0011/5/21:26,
1/5/57:67,
1/5/74:78,
1/5/105:109,
1/5/332:339,
1/8/33:35		No text annotation
J6_6FRK_0041/5/1352:1355,
1/5/1384:1388,
1/5/1395:1399,
1/5/1418:1421,
1/5/1464:1466,
1/5/1499:1504		No text annotation
J6_6FRK_0031/5/3920:3923,
1/5/4188:4191,
1/5/4204:4205,
1/5/4227:4230,
1/5/4331:4342,
1/5/4370:4381		No text annotation
J7_6FRK_0011/5/1666:1671,
1/5/1684:1685,
1/5/1852:1855,
1/5/1879:1884,
1/5/1895:1899,
1/5/2077:2078,
1/5/2278:2283		No text annotation

Problematic loops

#loop idProblemSequence
J3_6FRK_001No text annotation
J3_6FRK_002No text annotation
J3_6FRK_027No text annotation
J3_6FRK_028No text annotation
J3_6FRK_009No text annotation
J4_6FRK_004No text annotation
J6_6FRK_002No text annotation

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