3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGCGGCG
Length
7 nucleotides
Bulged bases
6FRK|1|5|C|3673
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6FRK_055 not in the Motif Atlas
Homologous match to HL_8C3A_047
Geometric discrepancy: 0.237
The information below is about HL_8C3A_047
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6FRK|1|5|C|3668
6FRK|1|5|G|3669
6FRK|1|5|C|3670
6FRK|1|5|G|3671
6FRK|1|5|G|3672
6FRK|1|5|C|3673
6FRK|1|5|G|3674

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain A
Ribosomal protein L8
Chain N
Ribosomal protein L15

Coloring options:


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