HL_6FRK_061

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCGAGG

Length

6 nucleotides

Bulged bases

6FRK|1|5|G|4104

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FRK_061 not in the Motif Atlas

Geometric match to HL_4PDB_001

Geometric discrepancy: 0.2387

The information below is about HL_4PDB_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6FRK|1|5|C|4102
6FRK|1|5|C|4103
6FRK|1|5|G|4104
6FRK|1|5|A|4105
6FRK|1|5|G|4106
6FRK|1|5|G|4107

Current chains

Chain 5

28S ribosomal RNA

Nearby chains