HL_6FRK_066

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FRK_066 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1433

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6FRK|1|5|C|4270
6FRK|1|5|A|4271
6FRK|1|5|G|4272
6FRK|1|5|A|4273
6FRK|1|5|A|4274
6FRK|1|5|G|4275
6FRK|1|5|G|4276
6FRK|1|5|G|4277

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain I

Ribosomal protein uL16

Chain T

Ribosomal protein eL21