3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UUUGGGUUUUA
Length
11 nucleotides
Bulged bases
6FRK|1|5|U|4354
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6FRK_069 not in the Motif Atlas
Geometric match to HL_2ZZM_002
Geometric discrepancy: 0.2789
The information below is about HL_2ZZM_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_13963.3
Basepair signature
cWW-F-F
Number of instances in this motif group
4

Unit IDs

6FRK|1|5|U|4352
6FRK|1|5|U|4353
6FRK|1|5|U|4354
6FRK|1|5|G|4355
6FRK|1|5|G|4356
6FRK|1|5|G|4357
6FRK|1|5|U|4358
6FRK|1|5|U|4359
6FRK|1|5|U|4360
6FRK|1|5|U|4361
6FRK|1|5|A|4362

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain L
Ribosomal protein eL13
Chain a
Ribosomal protein uL15
Chain i
Ribosomal protein eL36
Chain o
Ribosomal protein eL42

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1082 s