3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUGAACGCCUCUAAG
Length
15 nucleotides
Bulged bases
6FRK|1|5|G|4694, 6FRK|1|5|C|4698
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6FRK_076 not in the Motif Atlas
Homologous match to HL_8C3A_068
Geometric discrepancy: 0.1103
The information below is about HL_8C3A_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56677.9
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

6FRK|1|5|C|4688
6FRK|1|5|U|4689
6FRK|1|5|G|4690
6FRK|1|5|A|4691
6FRK|1|5|A|4692
6FRK|1|5|C|4693
6FRK|1|5|G|4694
6FRK|1|5|C|4695
6FRK|1|5|C|4696
6FRK|1|5|U|4697
6FRK|1|5|C|4698
6FRK|1|5|U|4699
6FRK|1|5|A|4700
6FRK|1|5|A|4701
6FRK|1|5|G|4702

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain H
Ribosomal protein uL6
Chain O
Ribosomal protein uL13
Chain m
Ribosomal protein eL40

Coloring options:


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