HL_6FRK_078

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6FRK|1|5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FRK_078 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.179

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6FRK|1|5|G|4975
6FRK|1|5|U|4976
6FRK|1|5|A|4977
6FRK|1|5|G|4978
6FRK|1|5|A|4979
6FRK|1|5|C|4980
6FRK|1|5|G|4981
6FRK|1|5|A|4982
6FRK|1|5|C|4983

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain P

Ribosomal protein uL22