HL_6FT6_034
3D structure
- PDB id
- 6FT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAUUUUAUGC
- Length
- 10 nucleotides
- Bulged bases
- 6FT6|1|1|A|1566, 6FT6|1|1|U|1572, 6FT6|1|1|G|1573
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FT6_034 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.392
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6FT6|1|1|G|1565
6FT6|1|1|A|1566
6FT6|1|1|U|1567
6FT6|1|1|U|1568
6FT6|1|1|U|1569
6FT6|1|1|U|1570
6FT6|1|1|A|1571
6FT6|1|1|U|1572
6FT6|1|1|G|1573
6FT6|1|1|C|1574
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain MM
- ATP-dependent RNA helicase DOB1
- Chain n
- Pescadillo homolog
Coloring options: