HL_6FT6_051

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGGGC

Length

6 nucleotides

Bulged bases

6FT6|1|1|G|2371

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FT6_051 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1285

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6FT6|1|1|G|2369
6FT6|1|1|G|2370
6FT6|1|1|G|2371
6FT6|1|1|G|2376
6FT6|1|1|G|2377
6FT6|1|1|C|2378

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain s

Nuclear GTP-binding protein NUG1