HL_6FT6_062

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

6FT6|1|1|G|2922, 6FT6|1|1|C|2925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FT6_062 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3288

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6FT6|1|1|U|2920
6FT6|1|1|U|2921
6FT6|1|1|G|2922
6FT6|1|1|U|2923
6FT6|1|1|U|2924
6FT6|1|1|C|2925
6FT6|1|1|A|2926

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain b

Nucleolar GTP-binding protein 1

Chain m

Nucleolar GTP-binding protein 2