3D structure

PDB id
6FT6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UGAUCA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6FT6_065 not in the Motif Atlas
Homologous match to HL_8C3A_067
Geometric discrepancy: 0.1557
The information below is about HL_8C3A_067
Detailed Annotation
Ribsomal LSU H95
Broad Annotation
Ribsomal LSU H95
Motif group
HL_65794.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
11

Unit IDs

6FT6|1|1|U|3068
6FT6|1|1|G|3069
6FT6|1|1|A|3070
6FT6|1|1|U|3071
6FT6|1|1|C|3072
6FT6|1|1|A|3073

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain R
60S ribosomal protein L19-A
Chain U
60S ribosomal protein L22-A
Chain b
Nucleolar GTP-binding protein 1
Chain d
60S ribosomal protein L31-A

Coloring options:


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