3D structure

PDB id
6FTG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
Experimental method
ELECTRON MICROSCOPY
Resolution
9.1 Å

Loop

Sequence
CGCGGCG
Length
7 nucleotides
Bulged bases
6FTG|1|u|G|134, 6FTG|1|u|G|135
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6FTG_004 not in the Motif Atlas
Geometric match to HL_4WF9_003
Geometric discrepancy: 0.1393
The information below is about HL_4WF9_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

6FTG|1|u|C|131
6FTG|1|u|G|132
6FTG|1|u|C|133
6FTG|1|u|G|134
6FTG|1|u|G|135
6FTG|1|u|C|136
6FTG|1|u|G|137

Current chains

Chain u
28S ribosomal RNA

Nearby chains

Chain N
Ribosomal protein L15
Chain h
eL29
Chain j
Ribosomal protein L37
Chain w
5.8S ribosomal RNA; 5.8S rRNA

Coloring options:


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