6FTG Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6FTG_001 | No text annotation | ||
| HL_6FTG_002 | No text annotation | ||
| HL_6FTG_003 | No text annotation | ||
| HL_6FTG_004 | No text annotation | ||
| HL_6FTG_005 | T-loop with 2 stacked bulged bases | ||
| HL_6FTG_006 | No text annotation | ||
| HL_6FTG_007 | T-loop with unstacked turn | ||
| HL_6FTG_008 | No text annotation | ||
| HL_6FTG_009 | Pseudoknot geometry | ||
| HL_6FTG_010 | GNRA | ||
| HL_6FTG_011 | GNRA | ||
| HL_6FTG_079 | No text annotation | ||
| HL_6FTG_012 | GNRA | ||
| HL_6FTG_013 | GNRA | ||
| HL_6FTG_014 | T-loop with 2 stacked bulged bases | ||
| HL_6FTG_015 | No text annotation | ||
| HL_6FTG_016 | GNRA | ||
| HL_6FTG_017 | No text annotation | ||
| HL_6FTG_018 | No text annotation | ||
| HL_6FTG_019 | No text annotation | ||
| HL_6FTG_020 | GNRA | ||
| HL_6FTG_021 | No text annotation | ||
| HL_6FTG_022 | No text annotation | ||
| HL_6FTG_023 | Externally structured | ||
| HL_6FTG_024 | GNRA | ||
| HL_6FTG_025 | No text annotation | ||
| HL_6FTG_026 | GNRA | ||
| HL_6FTG_027 | No text annotation | ||
| HL_6FTG_080 | No text annotation | ||
| HL_6FTG_028 | No text annotation | ||
| HL_6FTG_029 | GNRA wlth tandem sheared | ||
| HL_6FTG_030 | No text annotation | ||
| HL_6FTG_031 | GNRA | ||
| HL_6FTG_032 | T-loop with 2 stacked bulged bases | ||
| HL_6FTG_033 | Pseudoknot geometry with 3' bulge | ||
| HL_6FTG_034 | GNRA variation | ||
| HL_6FTG_035 | No text annotation | ||
| HL_6FTG_036 | No text annotation | ||
| HL_6FTG_037 | GNRA | ||
| HL_6FTG_038 | GNRA | ||
| HL_6FTG_081 | No text annotation | ||
| HL_6FTG_039 | No text annotation | ||
| HL_6FTG_040 | No text annotation | ||
| HL_6FTG_041 | No text annotation | ||
| HL_6FTG_042 | No text annotation | ||
| HL_6FTG_043 | No text annotation | ||
| HL_6FTG_044 | GNRA | ||
| HL_6FTG_045 | UNCG | ||
| HL_6FTG_082 | No text annotation | ||
| HL_6FTG_046 | No text annotation | ||
| HL_6FTG_047 | No text annotation | ||
| HL_6FTG_048 | GNRA | ||
| HL_6FTG_049 | No text annotation | ||
| HL_6FTG_050 | No text annotation | ||
| HL_6FTG_051 | No text annotation | ||
| HL_6FTG_052 | No text annotation | ||
| HL_6FTG_053 | No text annotation | ||
| HL_6FTG_054 | UNCG | ||
| HL_6FTG_055 | No text annotation | ||
| HL_6FTG_056 | No text annotation | ||
| HL_6FTG_057 | No text annotation | ||
| HL_6FTG_058 | No text annotation | ||
| HL_6FTG_059 | Pseudoknot geometry | ||
| HL_6FTG_060 | No text annotation | ||
| HL_6FTG_061 | GNRA | ||
| HL_6FTG_062 | No text annotation | ||
| HL_6FTG_063 | No text annotation | ||
| HL_6FTG_064 | GNRA with extra cWW | ||
| HL_6FTG_065 | No text annotation | ||
| HL_6FTG_066 | GNRA | ||
| HL_6FTG_067 | GNRA | ||
| HL_6FTG_068 | Ribsomal LSU H95 | ||
| HL_6FTG_069 | No text annotation | ||
| HL_6FTG_070 | No text annotation | ||
| HL_6FTG_071 | No text annotation | ||
| HL_6FTG_072 | UNCG variation | ||
| HL_6FTG_083 | No text annotation | ||
| HL_6FTG_073 | No text annotation | ||
| HL_6FTG_074 | GNRA | ||
| HL_6FTG_075 | Pseudoknot with intercalation | ||
| HL_6FTG_076 | No text annotation | ||
| HL_6FTG_077 | No text annotation | ||
| HL_6FTG_078 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6FTG_001 | Single bulged C | ||
| IL_6FTG_002 | Single bulged U | ||
| IL_6FTG_003 | Isolated non-canonical cWW pair | ||
| IL_6FTG_004 | Single stack bend | ||
| IL_6FTG_005 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_6FTG_006 | No text annotation | ||
| IL_6FTG_007 | Multiple bulged bases | ||
| IL_6FTG_176 | No text annotation | ||
| IL_6FTG_008 | No text annotation | ||
| IL_6FTG_009 | No text annotation | ||
| IL_6FTG_010 | No text annotation | ||
| IL_6FTG_011 | Single stack bend | ||
| IL_6FTG_012 | Major groove intercalation | ||
| IL_6FTG_013 | Single bulged C | ||
| IL_6FTG_014 | Single bulged U | ||
| IL_6FTG_015 | Not an internal loop | ||
| IL_6FTG_016 | Single stack bend | ||
| IL_6FTG_017 | Minor groove platform, major groove intercalation | ||
| IL_6FTG_018 | Single bulged A | ||
| IL_6FTG_019 | No text annotation | ||
| IL_6FTG_020 | Triple sheared with non-canonical cWW | ||
| IL_6FTG_021 | No text annotation | ||
| IL_6FTG_022 | No text annotation | ||
| IL_6FTG_023 | Isolated non-canonical cWW pair | ||
| IL_6FTG_177 | No text annotation | ||
| IL_6FTG_024 | No text annotation | ||
| IL_6FTG_025 | Decoding loop related | ||
| IL_6FTG_026 | No text annotation | ||
| IL_6FTG_027 | Single stack bend | ||
| IL_6FTG_028 | No text annotation | ||
| IL_6FTG_178 | Single stack bend | ||
| IL_6FTG_029 | No text annotation | ||
| IL_6FTG_030 | Single bulged A | ||
| IL_6FTG_031 | Isolated non-canonical cWW pair | ||
| IL_6FTG_032 | Single bulged G | ||
| IL_6FTG_033 | No text annotation | ||
| IL_6FTG_179 | No text annotation | ||
| IL_6FTG_034 | No text annotation | ||
| IL_6FTG_035 | No text annotation | ||
| IL_6FTG_036 | Single stack bend | ||
| IL_6FTG_037 | Isolated non-canonical cWW pair | ||
| IL_6FTG_180 | No text annotation | ||
| IL_6FTG_038 | No text annotation | ||
| IL_6FTG_039 | No text annotation | ||
| IL_6FTG_040 | Tandem non-canonical cWW pairs | ||
| IL_6FTG_181 | No text annotation | ||
| IL_6FTG_041 | No text annotation | ||
| IL_6FTG_042 | Minor groove platform | ||
| IL_6FTG_043 | No text annotation | ||
| IL_6FTG_044 | Single bulged C | ||
| IL_6FTG_045 | Single stack bend | ||
| IL_6FTG_046 | Isolated near basepair | ||
| IL_6FTG_047 | No text annotation | ||
| IL_6FTG_048 | No text annotation | ||
| IL_6FTG_049 | Triple sheared related | ||
| IL_6FTG_050 | Double sheared | ||
| IL_6FTG_051 | Single bulged A | ||
| IL_6FTG_052 | Single base bend | ||
| IL_6FTG_053 | Isolated non-canonical cWW pair | ||
| IL_6FTG_054 | tHW-tHW cross-strand stack | ||
| IL_6FTG_055 | Single bulged G | ||
| IL_6FTG_056 | Triple sheared | ||
| IL_6FTG_057 | Major groove platform with extra cWW | ||
| IL_6FTG_058 | Single bulged U | ||
| IL_6FTG_059 | Multiple bulged bases | ||
| IL_6FTG_189 | Isolated non-canonical cWW pair | ||
| IL_6FTG_060 | Tandem non-canonical cWW pairs | ||
| IL_6FTG_061 | No text annotation | ||
| IL_6FTG_062 | No text annotation | ||
| IL_6FTG_063 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6FTG_064 | Minor groove platform | ||
| IL_6FTG_065 | C-loop | ||
| IL_6FTG_066 | Tandem non-canonical cWW pairs | ||
| IL_6FTG_067 | Isolated non-canonical cWW pair | ||
| IL_6FTG_068 | Intercalated cWW | ||
| IL_6FTG_069 | Single stack bend | ||
| IL_6FTG_182 | Tandem non-canonical cWW pairs | ||
| IL_6FTG_070 | Isolated non-canonical cWW pair | ||
| IL_6FTG_071 | Isolated non-canonical cWW pair | ||
| IL_6FTG_072 | Isolated cWS basepair | ||
| IL_6FTG_073 | UAA/GAN | ||
| IL_6FTG_074 | SSU/LSU pseudoknot | ||
| IL_6FTG_075 | No text annotation | ||
| IL_6FTG_076 | No text annotation | ||
| IL_6FTG_077 | No text annotation | ||
| IL_6FTG_078 | No text annotation | ||
| IL_6FTG_079 | Single bulged U | ||
| IL_6FTG_080 | Kink-turn | ||
| IL_6FTG_081 | No text annotation | ||
| IL_6FTG_082 | Major groove platform with extra cWW | ||
| IL_6FTG_083 | Single bulged C | ||
| IL_6FTG_183 | No text annotation | ||
| IL_6FTG_084 | Isolated cWS basepair | ||
| IL_6FTG_085 | Single bulged A | ||
| IL_6FTG_086 | Kink-turn | ||
| IL_6FTG_087 | Single bulged A | ||
| IL_6FTG_088 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6FTG_089 | C-loop | ||
| IL_6FTG_090 | UAA/GAN | ||
| IL_6FTG_091 | Not an internal loop | ||
| IL_6FTG_092 | Isolated non-canonical cWW pair | ||
| IL_6FTG_093 | Triple sheared | ||
| IL_6FTG_094 | Single bulged A | ||
| IL_6FTG_095 | Single stack bend | ||
| IL_6FTG_096 | Single stack bend | ||
| IL_6FTG_097 | Isolated tHS basepair with bulges | ||
| IL_6FTG_098 | Single bulged G | ||
| IL_6FTG_099 | Kink-turn | ||
| IL_6FTG_100 | No text annotation | ||
| IL_6FTG_101 | No text annotation | ||
| IL_6FTG_102 | Isolated tWW turn | ||
| IL_6FTG_103 | Major groove platform; stack outside cWW | ||
| IL_6FTG_184 | No text annotation | ||
| IL_6FTG_104 | No text annotation | ||
| IL_6FTG_105 | tSH-tSH-tHH-tHS | ||
| IL_6FTG_106 | Isolated non-canonical cWW pair | ||
| IL_6FTG_107 | No text annotation | ||
| IL_6FTG_108 | No text annotation | ||
| IL_6FTG_109 | Single bulged A | ||
| IL_6FTG_110 | Kink-turn related | ||
| IL_6FTG_111 | No text annotation | ||
| IL_6FTG_112 | Multiple bulged bases | ||
| IL_6FTG_113 | Single stack bend | ||
| IL_6FTG_114 | No text annotation | ||
| IL_6FTG_115 | No text annotation | ||
| IL_6FTG_116 | Single stack bend | ||
| IL_6FTG_117 | Bulged stacked bases | ||
| IL_6FTG_118 | No text annotation | ||
| IL_6FTG_119 | Major groove platform with extra pair | ||
| IL_6FTG_120 | No text annotation | ||
| IL_6FTG_121 | Single bulged U | ||
| IL_6FTG_122 | Minor groove platform | ||
| IL_6FTG_123 | No text annotation | ||
| IL_6FTG_124 | No text annotation | ||
| IL_6FTG_125 | Minor groove platform | ||
| IL_6FTG_126 | Single bulged A | ||
| IL_6FTG_127 | Isolated tHS basepair with bulges | ||
| IL_6FTG_128 | Single bulged A | ||
| IL_6FTG_129 | Tandem non-canonical cWW pairs | ||
| IL_6FTG_130 | Single stack bend | ||
| IL_6FTG_131 | Major groove platform | ||
| IL_6FTG_132 | Isolated non-canonical cWW pair | ||
| IL_6FTG_133 | Major groove platform | ||
| IL_6FTG_134 | Major groove minor groove platform with extra cWW | ||
| IL_6FTG_135 | No text annotation | ||
| IL_6FTG_136 | Major groove platform | ||
| IL_6FTG_137 | Isolated non-canonical cWW with bulges | ||
| IL_6FTG_138 | Multiple bulged bases | ||
| IL_6FTG_139 | Isolated non-canonical cWW pair | ||
| IL_6FTG_185 | No text annotation | ||
| IL_6FTG_140 | No text annotation | ||
| IL_6FTG_141 | Single stack bend | ||
| IL_6FTG_142 | Isolated non-canonical cWW pair | ||
| IL_6FTG_143 | Single bulged A | ||
| IL_6FTG_186 | No text annotation | ||
| IL_6FTG_144 | Tandem non-canonical cWW pairs | ||
| IL_6FTG_145 | Double sheared | ||
| IL_6FTG_146 | Isolated non-canonical cWW pair | ||
| IL_6FTG_147 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6FTG_148 | No text annotation | ||
| IL_6FTG_149 | UAA/GAN related | ||
| IL_6FTG_150 | Isolated cWH basepair | ||
| IL_6FTG_151 | Multiple bulged bases | ||
| IL_6FTG_152 | UAA/GAN | ||
| IL_6FTG_153 | No text annotation | ||
| IL_6FTG_187 | No text annotation | ||
| IL_6FTG_154 | Tandem non-canonical cWW pairs | ||
| IL_6FTG_155 | No text annotation | ||
| IL_6FTG_156 | Tandem non-canonical cWW pairs | ||
| IL_6FTG_188 | No text annotation | ||
| IL_6FTG_157 | Tandem non-canonical cWW pairs | ||
| IL_6FTG_158 | No text annotation | ||
| IL_6FTG_159 | No text annotation | ||
| IL_6FTG_160 | Single stack bend | ||
| IL_6FTG_161 | Tandem non-canonical cWW pairs | ||
| IL_6FTG_162 | Isolated non-canonical cWW pair | ||
| IL_6FTG_163 | Single bulged C | ||
| IL_6FTG_164 | Isolated non-canonical cWW pair | ||
| IL_6FTG_165 | No text annotation | ||
| IL_6FTG_166 | Single bulged C | ||
| IL_6FTG_167 | Double sheared; A in syn | ||
| IL_6FTG_168 | Single bulged A | ||
| IL_6FTG_169 | Minor groove platform related | ||
| IL_6FTG_170 | Major groove minor groove platform; mini C-loop | ||
| IL_6FTG_171 | Symmetric double minor groove platform | ||
| IL_6FTG_172 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6FTG_173 | No text annotation | ||
| IL_6FTG_174 | Isolated non-canonical cWW pair | ||
| IL_6FTG_175 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6FTG_001 | No text annotation | ||
| J3_6FTG_018 | No text annotation | ||
| J3_6FTG_019 | No text annotation | ||
| J3_6FTG_002 | No text annotation | ||
| J3_6FTG_020 | No text annotation | ||
| J3_6FTG_003 | No text annotation | ||
| J3_6FTG_004 | No text annotation | ||
| J3_6FTG_005 | No text annotation | ||
| J3_6FTG_006 | No text annotation | ||
| J3_6FTG_021 | No text annotation | ||
| J3_6FTG_022 | No text annotation | ||
| J3_6FTG_007 | No text annotation | ||
| J3_6FTG_008 | No text annotation | ||
| J3_6FTG_009 | No text annotation | ||
| J3_6FTG_023 | No text annotation | ||
| J3_6FTG_024 | No text annotation | ||
| J3_6FTG_010 | No text annotation | ||
| J3_6FTG_025 | No text annotation | ||
| J3_6FTG_011 | No text annotation | ||
| J3_6FTG_012 | No text annotation | ||
| J3_6FTG_026 | No text annotation | ||
| J3_6FTG_013 | No text annotation | ||
| J3_6FTG_014 | No text annotation | ||
| J3_6FTG_027 | No text annotation | ||
| J3_6FTG_015 | No text annotation | ||
| J3_6FTG_016 | No text annotation | ||
| J3_6FTG_017 | No text annotation | ||
| J4_6FTG_001 | No text annotation | ||
| J4_6FTG_002 | No text annotation | ||
| J4_6FTG_003 | No text annotation | ||
| J4_6FTG_004 | No text annotation | ||
| J4_6FTG_005 | No text annotation | ||
| J4_6FTG_006 | No text annotation | ||
| J4_6FTG_007 | No text annotation | ||
| J4_6FTG_008 | No text annotation | ||
| J4_6FTG_009 | No text annotation | ||
| J4_6FTG_010 | No text annotation | ||
| J4_6FTG_011 | No text annotation | ||
| J5_6FTG_001 | No text annotation | ||
| J5_6FTG_002 | No text annotation | ||
| J5_6FTG_003 | No text annotation | ||
| J5_6FTG_004 | No text annotation | ||
| J5_6FTG_005 | No text annotation | ||
| J6_6FTG_001 | No text annotation | ||
| J6_6FTG_002 | No text annotation | ||
| J6_6FTG_003 | No text annotation | ||
| J7_6FTG_001 | No text annotation |
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