RNA 3D Hub //

6FTG Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6FTG_0011/u/37:44No text annotation
geometric
HL_5TBW_001
NA
HL_6FTG_0021/u/68:73No text annotation
homologous
HL_5TBW_002
NA
HL_6FTG_0031/u/89:95No text annotation
homologous
HL_8C3A_003
NA
HL_6FTG_0041/u/131:137No text annotation
geometric
HL_4WF9_003
HL_75660.3
HL_6FTG_0051/u/204:211T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_6FTG_0061/u/222:226No text annotation
homologous
HL_8C3A_006
NA
HL_6FTG_0071/u/230:238T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_6FTG_0081/u/289:298No text annotation
homologous
HL_5TBW_008
NA
HL_6FTG_0091/u/314:323Pseudoknot geometry
geometric
HL_4QLM_002
HL_77600.1
HL_6FTG_0101/u/368:373GNRA
homologous
HL_8C3A_010
NA
HL_6FTG_0111/u/393:398GNRA
homologous
HL_8C3A_011
NA
HL_6FTG_0791/u/996:1047No text annotation
HL_6FTG_0121/u/1178:1183GNRA
geometric
HL_4W90_003
HL_37824.5
HL_6FTG_0131/u/1252:1258GNRA
geometric
HL_4LFB_012
HL_37824.5
HL_6FTG_0141/u/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_5TBW_014
NA
HL_6FTG_0151/u/1364:1373No text annotation
HL_6FTG_0161/u/1389:1394GNRA
homologous
HL_8C3A_016
NA
HL_6FTG_0171/u/1406:1411No text annotation
HL_6FTG_0181/u/1436:1448No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_6FTG_0191/u/1479:1486No text annotation
HL_6FTG_0201/u/1561:1566GNRA
homologous
HL_5TBW_019
NA
HL_6FTG_0211/u/1593:1602No text annotation
homologous
HL_5TBW_020
NA
HL_6FTG_0221/u/1627:1635No text annotation
homologous
HL_5TBW_021
NA
HL_6FTG_0231/u/1675:1680Externally structured
homologous
HL_5TBW_022
NA
HL_6FTG_0241/u/1763:1769GNRA
homologous
HL_5TBW_023
NA
HL_6FTG_0251/u/1814:1823No text annotation
HL_6FTG_0261/u/1864:1870GNRA
homologous
HL_5TBW_025
NA
HL_6FTG_0271/u/1886:1893No text annotation
homologous
HL_5TBW_026
NA
HL_6FTG_0801/u/1973:1993No text annotation
HL_6FTG_0281/u/1978:1988No text annotation
homologous
HL_5TBW_027
NA
HL_6FTG_0291/u/2006:2013GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_6FTG_0301/u/2130:2244No text annotation
HL_6FTG_0311/u/2317:2322GNRA
homologous
HL_5TBW_030
NA
HL_6FTG_0321/u/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_5TBW_031
NA
HL_6FTG_0331/u/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_6FTG_0341/u/2458:2463GNRA variation
homologous
HL_5TBW_033
NA
HL_6FTG_0351/u/2487:2491No text annotation
HL_6FTG_0361/u/2523:2532No text annotation
homologous
HL_5TBW_035
NA
HL_6FTG_0371/u/2561:2566GNRA
geometric
HL_4QK9_002
HL_37824.5
HL_6FTG_0381/u/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_6FTG_0811/u/2622:2634No text annotation
HL_6FTG_0391/u/2623:2632No text annotation
geometric
HL_5NFV_001
NA
HL_6FTG_0401/u/2664:2670No text annotation
homologous
HL_8C3A_038
NA
HL_6FTG_0411/u/2705:2710No text annotation
geometric
HL_4WF9_003
HL_75660.3
HL_6FTG_0421/u/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_6FTG_0431/u/2792:2799No text annotation
homologous
HL_5TBW_041
NA
HL_6FTG_0441/u/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_6FTG_0451/u/2872:2877UNCG
homologous
HL_8C3A_043
NA
HL_6FTG_0821/u/2910:3584No text annotation
HL_6FTG_0461/u/3614:3618No text annotation
homologous
HL_8C3A_045
NA
HL_6FTG_0471/u/3639:3649No text annotation
homologous
HL_5TBW_046
NA
HL_6FTG_0481/u/3668:3674GNRA
homologous
HL_8C3A_047
NA
HL_6FTG_0491/u/3723:3729No text annotation
HL_6FTG_0501/u/3757:3767No text annotation
homologous
HL_5TBW_049
NA
HL_6FTG_0511/u/3796:3804No text annotation
homologous
HL_8C3A_050
NA
HL_6FTG_0521/u/3873:3882No text annotation
homologous
HL_5TBW_051
NA
HL_6FTG_0531/u/3948:4065No text annotation
geometric
HL_5AMQ_001
HL_48417.3
HL_6FTG_0541/u/4102:4107UNCG
geometric
HL_5J7L_171
HL_34617.3
HL_6FTG_0551/u/4139:4145No text annotation
geometric
HL_8C3A_221
HL_48417.3
HL_6FTG_0561/u/4193:4201No text annotation
homologous
HL_8C3A_055
NA
HL_6FTG_0571/u/4210:4222No text annotation
homologous
HL_5TBW_055
NA
HL_6FTG_0581/u/4250:4258No text annotation
homologous
HL_8C3A_057
NA
HL_6FTG_0591/u/4270:4277Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_6FTG_0601/u/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_6FTG_0611/u/4321:4326GNRA
homologous
HL_5TBW_059
NA
HL_6FTG_0621/u/4352:4362No text annotation
geometric
HL_4V83_139
NA
HL_6FTG_0631/u/4417:4425No text annotation
homologous
HL_5TBW_061
NA
HL_6FTG_0641/u/4473:4481GNRA with extra cWW
geometric
HL_4WF9_053
HL_04259.1
HL_6FTG_0651/u/4497:4503No text annotation
geometric
HL_5TBW_063
NA
HL_6FTG_0661/u/4540:4545GNRA
homologous
HL_8C3A_065
NA
HL_6FTG_0671/u/4603:4608GNRA
geometric
HL_4V9F_066
HL_37824.5
HL_6FTG_0681/u/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_6FTG_0691/u/4688:4702No text annotation
geometric
HL_4WF9_062
HL_74055.1
HL_6FTG_0701/u/4907:4914No text annotation
geometric
HL_5U3G_001
HL_75660.3
HL_6FTG_0711/u/4975:4983No text annotation
geometric
HL_5J7L_201
HL_64690.5
HL_6FTG_0721/u/5021:5028No text annotation
geometric
HL_6VMY_004
HL_53890.1
HL_6FTG_0831/v/32:45No text annotation
homologous
HL_8C3A_228
HL_50688.1
HL_6FTG_0731/v/36:41No text annotation
geometric
HL_5TBW_185
NA
HL_6FTG_0741/v/86:91GNRA
homologous
HL_5TBW_186
NA
HL_6FTG_0751/w/47:56Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_93438.1
HL_6FTG_0761/w/68:90No text annotation
homologous
HL_8C3A_075
NA
HL_6FTG_0771/w/107:112No text annotation
HL_6FTG_0781/w/121:129No text annotation

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6FTG_0011/u/6:7,
1/w/149:151		Single bulged C
homologous
IL_8C3A_002
NA
IL_6FTG_0021/u/12:14,
1/w/143:144		Single bulged U
homologous
IL_8C3A_003
NA
IL_6FTG_0031/u/16:18,
1/w/139:141		Isolated non-canonical cWW pair
geometric
IL_6IA2_005
IL_10289.2
IL_6FTG_0041/u/26:27,
1/u/55:57		Single stack bend
homologous
IL_5TBW_004
NA
IL_6FTG_0051/u/30:37,
1/u/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_84694.1
IL_6FTG_0061/u/81:88,
1/u/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_6FTG_0071/u/118:121,
1/u/152:153		Multiple bulged bases
geometric
IL_5XWP_001
IL_82107.2
IL_6FTG_1761/u/118:122,
1/u/147:153		No text annotation
IL_6FTG_0081/u/121:122,
1/u/147:152		No text annotation
homologous
IL_5TBW_007
NA
IL_6FTG_0091/u/125:126,
1/u/142:144		No text annotation
IL_6FTG_0101/u/168:173,
1/u/263:267		No text annotation
IL_6FTG_0111/u/180:182,
1/u/255:256		Single stack bend
geometric
IL_7KGA_003
NA
IL_6FTG_0121/u/184:189,
1/u/252:253		Major groove intercalation
geometric
IL_1NBS_009
IL_82107.2
IL_6FTG_0131/u/195:196,
1/u/244:246		Single bulged C
geometric
IL_4WF9_035
IL_61258.14
IL_6FTG_0141/u/199:201,
1/u/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_6FTG_0151/u/285:286,
1/u/300:302		Not an internal loop
geometric
IL_4UYK_002
NA
IL_6FTG_0161/u/286:288,
1/u/299:300		Single stack bend
geometric
IL_4V83_236
IL_06586.2
IL_6FTG_0171/u/339:342,
1/w/32:33		Minor groove platform, major groove intercalation
geometric
IL_1U9S_005
IL_58310.2
IL_6FTG_0181/u/348:350,
1/w/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_6FTG_0191/u/387:390,
1/u/401:414		No text annotation
homologous
IL_5TBW_014
NA
IL_6FTG_0201/u/415:421,
1/w/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_6FTG_0211/u/443:446,
1/u/1300:1304		No text annotation
geometric
IL_7MLW_007
IL_01472.1
IL_6FTG_0221/u/459:460,
1/u/695:697		No text annotation
IL_6FTG_0231/u/462:464,
1/u/691:693		Isolated non-canonical cWW pair
geometric
IL_4AOB_005
IL_63702.3
IL_6FTG_1771/u/464:473,
1/u/681:691		No text annotation
IL_6FTG_0241/u/482:486,
1/u/670:672		No text annotation
geometric
IL_4P3T_002
IL_01472.1
IL_6FTG_0251/u/488:490,
1/u/664:668		Decoding loop related
geometric
IL_2O3X_003
IL_31737.2
IL_6FTG_0261/u/490:493,
1/u/661:664		No text annotation
IL_6FTG_0271/u/495:496,
1/u/657:659		Single stack bend
geometric
IL_4LFB_041
IL_06586.2
IL_6FTG_0281/u/497:499,
1/u/655:656		No text annotation
IL_6FTG_1781/u/500:505,
1/u/653:654		Single stack bend
geometric
IL_4V9F_005
IL_06586.2
IL_6FTG_0301/u/508:510,
1/u/649:650		Single bulged A
geometric
IL_1U63_004
IL_31462.3
IL_6FTG_0311/u/511:515,
1/u/646:648		Isolated non-canonical cWW pair
geometric
IL_1U6B_001
NA
IL_6FTG_0321/u/708:709,
1/u/1287:1289		Single bulged G
geometric
IL_4LFB_036
IL_00225.11
IL_6FTG_0331/u/722:724,
1/u/942:946		No text annotation
IL_6FTG_0341/u/726:731,
1/u/938:940		No text annotation
IL_6FTG_0351/u/731:735,
1/u/928:938		No text annotation
IL_6FTG_0361/u/735:737,
1/u/927:928		Single stack bend
geometric
IL_7A0S_054
IL_06586.2
IL_6FTG_0371/u/740:742,
1/u/922:924		Isolated non-canonical cWW pair
geometric
IL_4P43_004
NA
IL_6FTG_1801/u/745:752,
1/u/911:919		No text annotation
IL_6FTG_0391/u/989:992,
1/u/1051:1064		No text annotation
IL_6FTG_0401/u/1074:1077,
1/u/1233:1236		Tandem non-canonical cWW pairs
geometric
IL_4V88_432
NA
IL_6FTG_1811/u/1074:1079,
1/u/1221:1236		No text annotation
IL_6FTG_0411/u/1077:1079,
1/u/1221:1233		No text annotation
IL_6FTG_0421/u/1081:1082,
1/u/1217:1219		Minor groove platform
geometric
IL_6DLR_003
IL_92540.1
IL_6FTG_0431/u/1082:1085,
1/u/1212:1217		No text annotation
IL_6FTG_0441/u/1086:1087,
1/u/1209:1211		Single bulged C
geometric
IL_3W3S_001
IL_61258.14
IL_6FTG_0451/u/1097:1098,
1/u/1197:1199		Single stack bend
geometric
IL_5J7L_249
IL_06586.2
IL_6FTG_0461/u/1173:1175,
1/u/1186:1188		Isolated near basepair
geometric
IL_4V88_406
NA
IL_6FTG_0471/u/1357:1360,
1/u/1378:1382		No text annotation
IL_6FTG_0481/u/1360:1361,
1/u/1376:1378		No text annotation
IL_6FTG_0491/u/1425:1429,
1/u/1455:1460		Triple sheared related
geometric
IL_4V9F_018
IL_97631.1
IL_6FTG_0501/u/1431:1434,
1/u/1450:1453		Double sheared
geometric
IL_4WF9_087
IL_09705.13
IL_6FTG_0511/u/1467:1468,
1/u/1496:1498		Single bulged A
homologous
IL_5TBW_024
NA
IL_6FTG_0521/u/1474:1476,
1/u/1489:1490		Single base bend
geometric
IL_5IBB_340
IL_06586.2
IL_6FTG_0531/u/1520:1522,
1/u/1655:1657		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_6FTG_0541/u/1522:1526,
1/u/1648:1655		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_6FTG_0551/u/1550:1551,
1/u/1576:1578		Single bulged G
geometric
IL_4V9F_026
IL_00225.11
IL_6FTG_0561/u/1551:1555,
1/u/1572:1576		Triple sheared
homologous
IL_8C3A_033
NA
IL_6FTG_0571/u/1586:1589,
1/u/1605:1607		Major groove platform with extra cWW
homologous
IL_5TBW_031
NA
IL_6FTG_0581/u/1590:1592,
1/u/1603:1604		Single bulged U
homologous
IL_8C3A_035
NA
IL_6FTG_0591/u/1624:1626,
1/u/1636:1640		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_6FTG_1891/u/1671:1673,
1/u/1682:1684		No text annotation
IL_6FTG_0611/u/1686:1688,
1/u/1848:1851		No text annotation
IL_6FTG_0621/u/1694:1725,
1/u/1837:1842		No text annotation
IL_6FTG_0631/u/1732:1737,
1/u/1792:1797		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_6FTG_0641/u/1737:1738,
1/u/1790:1792		Minor groove platform
homologous
IL_8C3A_042
NA
IL_6FTG_0651/u/1739:1744,
1/u/1786:1789		C-loop
homologous
IL_5TBW_040
NA
IL_6FTG_0661/u/1746:1749,
1/u/1781:1784		Tandem non-canonical cWW pairs
homologous
IL_5TBW_041
NA
IL_6FTG_0671/u/1749:1751,
1/u/1779:1781		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_6FTG_0681/u/1753:1756,
1/u/1775:1777		Intercalated cWW
geometric
IL_7A0S_044
IL_31737.2
IL_6FTG_0691/u/1756:1758,
1/u/1774:1775		Single stack bend
geometric
IL_4LFB_041
IL_06586.2
IL_6FTG_0701/u/1761:1763,
1/u/1769:1771		Isolated non-canonical cWW pair
geometric
IL_4WF9_083
IL_10289.2
IL_6FTG_0711/u/1858:1860,
1/u/1874:1876		Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_6FTG_0731/u/1905:1909,
1/u/2067:2071		UAA/GAN
homologous
IL_5TBW_048
NA
IL_6FTG_0741/u/1911:1918,
1/u/2064:2065		SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_6FTG_0751/u/1918:1920,
1/u/2063:2064		No text annotation
IL_6FTG_0761/u/1920:1922,
1/u/2062:2063		No text annotation
IL_6FTG_0771/u/1926:1933,
1/u/2053:2058		No text annotation
geometric
IL_5TBW_051
NA
IL_6FTG_0781/u/1933:1944,
1/u/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_6FTG_0791/u/1946:1948,
1/u/2035:2036		Single bulged U
homologous
IL_5TBW_053
NA
IL_6FTG_0801/u/1957:1965,
1/u/2022:2026		No text annotation
homologous
IL_8P9A_282
IL_99692.1
IL_6FTG_0811/u/1973:1977,
1/u/1989:1993		No text annotation
homologous
IL_8C3A_058
NA
IL_6FTG_0821/u/2001:2005,
1/u/2014:2016		Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_6FTG_0831/u/2083:2085,
1/u/2272:2273		Single bulged C
geometric
IL_3DIL_001
IL_61258.14
IL_6FTG_1831/u/2087:2128,
1/u/2246:2270		No text annotation
IL_6FTG_0841/u/2290:2292,
1/u/2342:2345		Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_6FTG_0851/u/2299:2301,
1/u/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_6FTG_0861/u/2302:2309,
1/u/2329:2333		Kink-turn
homologous
IL_5TBW_059
NA
IL_6FTG_0871/u/2312:2314,
1/u/2325:2326		Single bulged A
homologous
IL_5TBW_060
NA
IL_6FTG_0881/u/2358:2364,
1/u/3858:3863		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_6FTG_0891/u/2415:2419,
1/u/2427:2429		C-loop
geometric
IL_7A0S_047
IL_83150.1
IL_6FTG_0901/u/2446:2450,
1/u/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_6FTG_0911/u/2477:2479,
1/u/2499:2500		Not an internal loop
geometric
IL_4UYK_002
NA
IL_6FTG_0921/u/2542:2547,
1/u/2772:2774		Isolated non-canonical cWW pair
geometric
IL_1U6B_001
NA
IL_6FTG_0931/u/2589:2593,
1/u/2752:2756		Triple sheared
homologous
IL_5TBW_067
NA
IL_6FTG_0941/u/2613:2614,
1/u/2724:2726		Single bulged A
geometric
IL_3MJA_001
IL_31462.3
IL_6FTG_0951/u/2614:2615,
1/u/2722:2724		Single stack bend
homologous
IL_8C3A_076
NA
IL_6FTG_0961/u/2622:2623,
1/u/2632:2634		Single stack bend
geometric
IL_4V83_236
IL_06586.2
IL_6FTG_0971/u/2646:2648,
1/u/2685:2688		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_85599.1
IL_6FTG_0981/u/2651:2653,
1/u/2681:2682		Single bulged G
geometric
IL_3NDB_004
IL_00225.11
IL_6FTG_0991/u/2656:2662,
1/u/2672:2678		Kink-turn
homologous
IL_5TBW_073
NA
IL_6FTG_1001/u/2704:2705,
1/u/2710:2712		No text annotation
IL_6FTG_1011/u/2832:2838,
1/u/3850:3853		No text annotation
homologous
IL_5TBW_074
NA
IL_6FTG_1021/u/2844:2846,
1/u/3842:3844		Isolated tWW turn
homologous
IL_5TBW_075
NA
IL_6FTG_1031/u/2847:2850,
1/u/3840:3841		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_6FTG_1841/u/2847:2855,
1/u/3837:3841		No text annotation
homologous
IL_8C3A_484
NA
IL_6FTG_1041/u/2850:2855,
1/u/3837:3840		No text annotation
homologous
IL_8C3A_083
NA
IL_6FTG_1051/u/2867:2872,
1/u/2877:2883		tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_47346.1
IL_6FTG_1061/u/2889:2891,
1/u/3610:3612		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_6FTG_1071/u/2896:2897,
1/u/3602:3605		No text annotation
homologous
IL_8C3A_086
NA
IL_6FTG_1081/u/2901:2905,
1/u/3589:3598		No text annotation
IL_6FTG_1091/u/3632:3633,
1/u/3827:3829		Single bulged A
homologous
IL_5TBW_082
NA
IL_6FTG_1101/u/3660:3665,
1/u/3677:3684		Kink-turn related
homologous
IL_5TBW_083
NA
IL_6FTG_1111/u/3700:3703,
1/u/3749:3750		No text annotation
homologous
IL_8C3A_089
NA
IL_6FTG_1121/u/3704:3705,
1/u/3745:3748		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_6FTG_1131/u/3708:3710,
1/u/3741:3742		Single stack bend
homologous
IL_8C3A_091
NA
IL_6FTG_1141/u/3710:3714,
1/u/3739:3741		No text annotation
homologous
IL_8C3A_092
NA
IL_6FTG_1151/u/3715:3721,
1/u/3732:3738		No text annotation
homologous
IL_5TBW_088
NA
IL_6FTG_1161/u/3722:3723,
1/u/3729:3731		Single stack bend
geometric
IL_4V83_236
IL_06586.2
IL_6FTG_1171/u/3780:3781,
1/u/3811:3814		Bulged stacked bases
homologous
IL_5TBW_089
NA
IL_6FTG_1181/u/3781:3792,
1/u/3808:3811		No text annotation
homologous
IL_8C3A_095
NA
IL_6FTG_1191/u/3895:3898,
1/u/4563:4565		Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_6FTG_1201/u/3900:3902,
1/u/4558:4561		No text annotation
homologous
IL_8C3A_097
NA
IL_6FTG_1211/u/3913:3915,
1/u/4388:4389		Single bulged U
homologous
IL_5TBW_093
NA
IL_6FTG_1221/u/3916:3917,
1/u/4384:4387		Minor groove platform
homologous
IL_5TBW_094
NA
IL_6FTG_1231/u/3927:3929,
1/u/4181:4184		No text annotation
homologous
IL_8C3A_100
NA
IL_6FTG_1241/u/4082:4088,
1/u/4161:4164		No text annotation
homologous
IL_5TBW_096
NA
IL_6FTG_1251/u/4095:4097,
1/u/4112:4113		Minor groove platform
geometric
IL_5TBW_039
NA
IL_6FTG_1261/u/4191:4192,
1/u/4202:4204		Single bulged A
homologous
IL_8C3A_107
NA
IL_6FTG_1271/u/4243:4245,
1/u/4263:4267		Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_6FTG_1281/u/4291:4293,
1/u/4317:4318		Single bulged A
geometric
IL_4V88_399
NA
IL_6FTG_1291/u/4295:4298,
1/u/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_6FTG_1301/u/4347:4350,
1/u/4364:4365		Single stack bend
geometric
IL_5J7L_032
IL_06586.2
IL_6FTG_1311/u/4400:4401,
1/u/4442:4444		Major groove platform
homologous
IL_5TBW_102
NA
IL_6FTG_1321/u/4401:4403,
1/u/4440:4442		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_6FTG_1331/u/4403:4405,
1/u/4439:4440		Major groove platform
geometric
IL_5TBW_104
NA
IL_6FTG_1341/u/4405:4407,
1/u/4435:4439		Major groove minor groove platform with extra cWW
homologous
IL_8C3A_113
NA
IL_6FTG_1351/u/4412:4416,
1/u/4426:4430		No text annotation
homologous
IL_8C3A_114
NA
IL_6FTG_1361/u/4453:4454,
1/u/4526:4528		Major groove platform
homologous
IL_8C3A_115
NA
IL_6FTG_1371/u/4456:4458,
1/u/4520:4524		Isolated non-canonical cWW with bulges
homologous
IL_5TBW_108
NA
IL_6FTG_1381/u/4458:4459,
1/u/4517:4520		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_6FTG_1391/u/4466:4468,
1/u/4489:4491		Isolated non-canonical cWW pair
homologous
IL_5TBW_110
NA
IL_6FTG_1851/u/4466:4470,
1/u/4485:4491		No text annotation
IL_6FTG_1401/u/4468:4470,
1/u/4485:4489		No text annotation
IL_6FTG_1411/u/4472:4473,
1/u/4481:4483		Single stack bend
geometric
IL_4V83_236
IL_06586.2
IL_6FTG_1421/u/4495:4497,
1/u/4503:4505		Isolated non-canonical cWW pair
homologous
IL_5TBW_112
NA
IL_6FTG_1431/u/4537:4538,
1/u/4547:4549		Single bulged A
geometric
IL_7RQB_101
NA
IL_6FTG_1861/u/4578:4582,
1/u/4721:4725		No text annotation
IL_6FTG_1441/u/4579:4582,
1/u/4721:4724		Tandem non-canonical cWW pairs
geometric
IL_4EYA_008
IL_86374.1
IL_6FTG_1451/u/4582:4585,
1/u/4717:4721		Double sheared
homologous
IL_8C3A_123
NA
IL_6FTG_1461/u/4590:4592,
1/u/4618:4620		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_6FTG_1471/u/4596:4603,
1/u/4608:4614		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_6FTG_1481/u/4624:4629,
1/u/4669:4673		No text annotation
IL_6FTG_1491/u/4632:4637,
1/u/4662:4666		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_6FTG_1501/u/4638:4640,
1/u/4659:4661		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10167.3
IL_6FTG_1511/u/4641:4642,
1/u/4655:4658		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_6FTG_1521/u/4681:4685,
1/u/4705:4709		UAA/GAN
homologous
IL_8C3A_129
NA
IL_6FTG_1531/u/4739:4743,
1/u/4957:4960		No text annotation
IL_6FTG_1871/u/4739:4746,
1/u/4954:4960		No text annotation
IL_6FTG_1541/u/4743:4746,
1/u/4954:4957		Tandem non-canonical cWW pairs
geometric
IL_3WBM_002
IL_54697.2
IL_6FTG_1551/u/4755:4766,
1/u/4868:4878		No text annotation
IL_6FTG_1881/u/4769:4772,
1/u/4863:4865		No text annotation
geometric
IL_8VTW_096
NA
IL_6FTG_1571/u/4885:4888,
1/u/4931:4934		Tandem non-canonical cWW pairs
geometric
IL_1MFQ_004
IL_54697.2
IL_6FTG_1581/u/4891:4896,
1/u/4924:4928		No text annotation
IL_6FTG_1591/u/4899:4901,
1/u/4920:4921		No text annotation
IL_6FTG_1601/u/4966:4968,
1/u/5065:5066		Single stack bend
geometric
IL_4LFB_041
IL_06586.2
IL_6FTG_1611/u/4972:4975,
1/u/4983:4986		Tandem non-canonical cWW pairs
homologous
IL_8C3A_135
NA
IL_6FTG_1621/u/4992:4994,
1/u/5057:5059		Isolated non-canonical cWW pair
geometric
IL_3D0U_006
IL_10289.2
IL_6FTG_1631/u/4996:4997,
1/u/5053:5055		Single bulged C
geometric
IL_1KUQ_002
IL_61258.14
IL_6FTG_1641/u/5000:5002,
1/u/5045:5050		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_6FTG_1651/u/5003:5009,
1/u/5039:5044		No text annotation
IL_6FTG_1661/u/5012:5014,
1/u/5035:5036		Single bulged C
geometric
IL_4WF9_035
IL_61258.14
IL_6FTG_1671/u/5014:5017,
1/u/5032:5035		Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_6FTG_1681/v/15:16,
1/v/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_6FTG_1691/v/21:27,
1/v/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_6FTG_1701/v/28:29,
1/v/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_357
IL_68140.2
IL_6FTG_1711/v/32:36,
1/v/41:45		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_6FTG_1721/v/71:78,
1/v/98:104		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_6FTG_1731/v/79:81,
1/v/95:97		No text annotation
geometric
IL_7RQB_015
NA
IL_6FTG_1741/v/82:85,
1/v/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_6FTG_1751/w/64:66,
1/w/92:95		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA

Problematic loops

#loop idProblemSequence
IL_6FTG_029No text annotation
IL_6FTG_179No text annotation
IL_6FTG_038No text annotation
IL_6FTG_060Tandem non-canonical cWW pairs
IL_6FTG_182Tandem non-canonical cWW pairs
IL_6FTG_072Isolated cWS basepair
IL_6FTG_156Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6FTG_0011/u/112:116,
1/u/155:160,
1/u/275:278		No text annotation
J3_6FTG_0181/u/196:199,
1/u/215:228,
1/u/240:244		No text annotation
J3_6FTG_0191/u/351:367,
1/u/374:379,
1/w/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.1
J3_6FTG_0021/u/380:387,
1/u/414:415,
1/w/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_6FTG_0201/u/380:390,
1/u/401:415,
1/w/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_6FTG_0031/u/448:455,
1/u/701:704,
1/u/1293:1298		No text annotation
J3_6FTG_0041/u/711:713,
1/u/955:976,
1/u/1278:1285		No text annotation
J3_6FTG_0051/u/1531:1537,
1/u/1622:1624,
1/u/1640:1643		No text annotation
homologous
J3_5TBW_004
NA
J3_6FTG_0061/u/1545:1548,
1/u/1580:1584,
1/u/1609:1614		No text annotation
homologous
J3_5TBW_005
NA
J3_6FTG_0211/u/1726:1727,
1/u/1802:1806,
1/u/1832:1836		No text annotation
J3_6FTG_0221/u/1965:1971,
1/u/1995:2001,
1/u/2016:2022		No text annotation
J3_6FTG_0071/u/2393:2399,
1/u/2805:2807,
1/u/2819:2822		No text annotation
homologous
J3_5TBW_008
NA
J3_6FTG_0081/u/2402:2405,
1/u/2785:2791,
1/u/2800:2802		No text annotation
homologous
J3_5TBW_009
NA
J3_6FTG_0091/u/2440:2445,
1/u/2515:2519,
1/u/2536:2537		No text annotation
homologous
J3_5TBW_010
NA
J3_6FTG_0231/u/2451:2456,
1/u/2465:2476,
1/u/2501:2508		No text annotation
J3_6FTG_0241/u/2549:2555,
1/u/2572:2575,
1/u/2757:2770		No text annotation
J3_6FTG_0101/u/2575:2576,
1/u/2585:2589,
1/u/2756:2757		No text annotation
homologous
J3_8C3A_054
NA
J3_6FTG_0251/u/2598:2602,
1/u/2737:2738,
1/u/2742:2747		No text annotation
homologous
J3_8P9A_058
J3_12393.1
J3_6FTG_0111/u/3937:3939,
1/u/4074:4078,
1/u/4168:4173		No text annotation
geometric
J3_8VTW_006
NA
J3_6FTG_0121/u/4091:4094,
1/u/4114:4129,
1/u/4155:4158		No text annotation
homologous
J3_8C3A_009
NA
J3_6FTG_0261/u/4228:4230,
1/u/4331:4342,
1/u/4370:4375		No text annotation
homologous
J3_8C3A_056
NA
J3_6FTG_0131/u/4241:4243,
1/u/4267:4269,
1/u/4278:4283		No text annotation
homologous
J3_5TBW_013
NA
J3_6FTG_0141/u/4463:4466,
1/u/4491:4493,
1/u/4507:4513		No text annotation
homologous
J3_5TBW_014
NA
J3_6FTG_0271/u/4748:4754,
1/u/4879:4884,
1/u/4935:4952		No text annotation
J3_6FTG_0151/u/4970:4972,
1/u/4986:4991,
1/u/5060:5063		No text annotation
J3_6FTG_0161/v/9:14,
1/v/65:66,
1/v/109:110		No text annotation
homologous
J3_5TBW_045
NA
J3_6FTG_0171/w/44:45,
1/w/58:64,
1/w/95:99		No text annotation
homologous
J3_8C3A_060
NA
J4_6FTG_0011/u/111:112,
1/u/278:283,
1/u/304:310,
1/u/327:330		No text annotation
homologous
J4_8P9A_012
J4_45801.5
J4_6FTG_0021/u/196:199,
1/u/215:222,
1/u/226:228,
1/u/240:244		No text annotation
J4_6FTG_0031/u/980:983,
1/u/1070:1074,
1/u/1236:1245,
1/u/1265:1274		No text annotation
J4_6FTG_0041/u/2365:2371,
1/u/2389:2391,
1/u/2824:2829,
1/u/3856:3857		No text annotation
J4_6FTG_0051/u/2406:2410,
1/u/2434:2439,
1/u/2538:2539,
1/u/2777:2784		No text annotation
homologous
J4_8C3A_004
NA
J4_6FTG_0061/u/2618:2619,
1/u/2637:2642,
1/u/2692:2698,
1/u/2718:2719		No text annotation
J4_6FTG_0071/u/3634:3638,
1/u/3650:3654,
1/u/3690:3694,
1/u/3821:3826		No text annotation
homologous
J4_8C3A_006
NA
J4_6FTG_0081/u/3696:3698,
1/u/3752:3754,
1/u/3770:3780,
1/u/3814:3819		No text annotation
J4_6FTG_0091/u/4231:4235,
1/u/4289:4291,
1/u/4318:4319,
1/u/4328:4330		No text annotation
J4_6FTG_0101/u/4231:4235,
1/u/4289:4293,
1/u/4317:4319,
1/u/4328:4330		No text annotation
homologous
J4_8P9A_019
J4_04930.5
J4_6FTG_0111/u/4587:4590,
1/u/4620:4621,
1/u/4676:4678,
1/u/4712:4715		No text annotation
J5_6FTG_0011/u/20:21,
1/w/35:42,
1/w/101:106,
1/w/113:114,
1/w/136:137		No text annotation
J5_6FTG_0021/u/1335:1340,
1/u/1516:1519,
1/u/1658:1661,
1/u/2288:2290,
1/u/2345:2351		No text annotation
homologous
J5_8P9A_011
J5_92974.1
J5_6FTG_0031/u/2855:2863,
1/u/2887:2888,
1/u/3613:3614,
1/u/3618:3626,
1/u/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J5_6FTG_0041/u/3903:3910,
1/u/4392:4400,
1/u/4444:4453,
1/u/4528:4534,
1/u/4552:4557		No text annotation
J5_6FTG_0051/u/3920:3923,
1/u/4188:4191,
1/u/4204:4205,
1/u/4227:4228,
1/u/4375:4381		No text annotation
homologous
J5_8C3A_006
NA
J6_6FTG_0011/u/21:26,
1/u/57:67,
1/u/74:78,
1/u/105:109,
1/u/332:339,
1/w/33:35		No text annotation
J6_6FTG_0021/u/1352:1355,
1/u/1384:1388,
1/u/1395:1399,
1/u/1418:1421,
1/u/1464:1466,
1/u/1499:1504		No text annotation
J6_6FTG_0031/u/3920:3923,
1/u/4188:4191,
1/u/4204:4205,
1/u/4227:4230,
1/u/4331:4342,
1/u/4370:4381		No text annotation
J7_6FTG_0011/u/1666:1671,
1/u/1684:1685,
1/u/1852:1855,
1/u/1879:1884,
1/u/1895:1899,
1/u/2077:2078,
1/u/2278:2283		No text annotation

Problematic loops

No problematic loops


Coloring options:
Copyright 2025 BGSU RNA group. Page generated in 0.08 s