HL_6FTG_033

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6FTG|1|u|G|2421, 6FTG|1|u|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_033 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.2286

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6FTG|1|u|A|2420
6FTG|1|u|G|2421
6FTG|1|u|C|2422
6FTG|1|u|A|2423
6FTG|1|u|G|2424
6FTG|1|u|U|2425
6FTG|1|u|U|2426

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain l

eL39