3D structure

PDB id
6FTG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
Experimental method
ELECTRON MICROSCOPY
Resolution
9.1 Å

Loop

Sequence
GUUCAGAUCC
Length
10 nucleotides
Bulged bases
6FTG|1|u|U|2530, 6FTG|1|u|C|2531
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6FTG_036 not in the Motif Atlas
Homologous match to HL_5TBW_035
Geometric discrepancy: 0.1147
The information below is about HL_5TBW_035
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_35087.1
Basepair signature
cWW-tWH-F-F-F-F
Number of instances in this motif group
7

Unit IDs

6FTG|1|u|G|2523
6FTG|1|u|U|2524
6FTG|1|u|U|2525
6FTG|1|u|C|2526
6FTG|1|u|A|2527
6FTG|1|u|G|2528
6FTG|1|u|A|2529
6FTG|1|u|U|2530
6FTG|1|u|C|2531
6FTG|1|u|C|2532

Current chains

Chain u
28S ribosomal RNA

Nearby chains

Chain R
eL19
Chain X
uL23
Chain g
eL34
Chain l
eL39
Chain x
Protein transport protein Sec61 subunit alpha isoform 1

Coloring options:


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