HL_6FTG_039

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

AGUUCUCUUU

Length

10 nucleotides

Bulged bases

6FTG|1|u|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_039 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.364

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6FTG|1|u|A|2623
6FTG|1|u|G|2624
6FTG|1|u|U|2625
6FTG|1|u|U|2626
6FTG|1|u|C|2627
6FTG|1|u|U|2628
6FTG|1|u|C|2629
6FTG|1|u|U|2630
6FTG|1|u|U|2631
6FTG|1|u|U|2632

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain R

eL19

Chain U

eL22