HL_6FTG_041

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_041 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1422

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6FTG|1|u|G|2705
6FTG|1|u|G|2706
6FTG|1|u|U|2707
6FTG|1|u|U|2708
6FTG|1|u|C|2709
6FTG|1|u|C|2710

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain R

eL19

Chain X

uL23

Chain x

Protein transport protein Sec61 subunit alpha isoform 1