HL_6FTG_056

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6FTG|1|u|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_056 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1129

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6FTG|1|u|C|4193
6FTG|1|u|U|4194
6FTG|1|u|G|4195
6FTG|1|u|G|4196
6FTG|1|u|G|4197
6FTG|1|u|G|4198
6FTG|1|u|C|4199
6FTG|1|u|G|4200
6FTG|1|u|G|4201

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein L10 (Predicted)

Chain b

60S ribosomal protein L29