HL_6FTG_069

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6FTG|1|u|G|4694, 6FTG|1|u|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_069 not in the Motif Atlas

Geometric match to HL_4WF9_062

Geometric discrepancy: 0.1424

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6FTG|1|u|C|4688
6FTG|1|u|U|4689
6FTG|1|u|G|4690
6FTG|1|u|A|4691
6FTG|1|u|A|4692
6FTG|1|u|C|4693
6FTG|1|u|G|4694
6FTG|1|u|C|4695
6FTG|1|u|C|4696
6FTG|1|u|U|4697
6FTG|1|u|C|4698
6FTG|1|u|U|4699
6FTG|1|u|A|4700
6FTG|1|u|A|4701
6FTG|1|u|G|4702

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40