HL_6FTG_071

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6FTG|1|u|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_071 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1181

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6FTG|1|u|G|4975
6FTG|1|u|U|4976
6FTG|1|u|A|4977
6FTG|1|u|G|4978
6FTG|1|u|A|4979
6FTG|1|u|C|4980
6FTG|1|u|G|4981
6FTG|1|u|A|4982
6FTG|1|u|C|4983

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31