HL_6FTI_003
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FTI_003 not in the Motif Atlas
- Homologous match to HL_6PMO_005
- Geometric discrepancy: 0.1646
- The information below is about HL_6PMO_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.4
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 143
Unit IDs
6FTI|1|q|G|53
6FTI|1|q|U|54
6FTI|1|q|U|55
6FTI|1|q|C|56
6FTI|1|q|G|57
6FTI|1|q|A|58
6FTI|1|q|A|59
6FTI|1|q|A|60
6FTI|1|q|C|61
Current chains
- Chain q
- p-Site tRNA
Nearby chains
- Chain J
- Ribosomal protein L11
- Chain o
- eL42
- Chain u
- Large subunit ribosomal RNA; LSU rRNA
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