HL_6FTI_012
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 6FTI|1|u|G|315
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FTI_012 not in the Motif Atlas
- Geometric match to HL_4QLM_002
- Geometric discrepancy: 0.2609
- The information below is about HL_4QLM_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
6FTI|1|u|G|314
6FTI|1|u|G|315
6FTI|1|u|U|316
6FTI|1|u|A|317
6FTI|1|u|A|318
6FTI|1|u|A|319
6FTI|1|u|C|320
6FTI|1|u|U|321
6FTI|1|u|C|322
6FTI|1|u|C|323
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain L
- eL13
- Chain N
- Ribosomal protein L15
- Chain a
- uL15
- Chain i
- 60S ribosomal protein L36
- Chain o
- eL42
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