HL_6FTI_015

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_015 not in the Motif Atlas

Geometric match to HL_4W90_003

Geometric discrepancy: 0.1438

The information below is about HL_4W90_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6FTI|1|u|G|1178
6FTI|1|u|U|1179
6FTI|1|u|C|1180
6FTI|1|u|C|1181
6FTI|1|u|C|1182
6FTI|1|u|C|1183

Current chains

Chain u

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L5