HL_6FTI_017

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6FTI|1|u|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_017 not in the Motif Atlas

Homologous match to HL_5TBW_014

Geometric discrepancy: 0.0819

The information below is about HL_5TBW_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6FTI|1|u|U|1317
6FTI|1|u|C|1318
6FTI|1|u|U|1319
6FTI|1|u|U|1320
6FTI|1|u|G|1321
6FTI|1|u|A|1322
6FTI|1|u|A|1323
6FTI|1|u|A|1324
6FTI|1|u|C|1325
6FTI|1|u|A|1326

Current chains

Chain u

28S rRNA

Nearby chains

Chain B

uL3

Chain a

uL15

Chain e

eL32